Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFDA3_RS11515 Genome accession   NZ_CP170251
Coordinates   2440789..2441298 (-) Length   169 a.a.
NCBI ID   WP_002447681.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2435986..2442811 2440789..2441298 within 0


Gene organization within MGE regions


Location: 2435986..2442811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA3_RS11475 (ACFDA3_11470) - 2435986..2436609 (-) 624 WP_325962238.1 terminase small subunit -
  ACFDA3_RS11480 (ACFDA3_11475) - 2436780..2437311 (+) 532 Protein_2213 helix-turn-helix domain-containing protein -
  ACFDA3_RS11485 (ACFDA3_11480) - 2437380..2437856 (+) 477 WP_325962239.1 hypothetical protein -
  ACFDA3_RS11490 (ACFDA3_11485) - 2437995..2438132 (+) 138 WP_186312890.1 hypothetical protein -
  ACFDA3_RS11495 (ACFDA3_11490) - 2438153..2438590 (+) 438 WP_259980108.1 GNAT family N-acetyltransferase -
  ACFDA3_RS11500 (ACFDA3_11495) - 2438612..2439831 (+) 1220 Protein_2217 tyrosine-type recombinase/integrase -
  ACFDA3_RS11505 (ACFDA3_11500) - 2439828..2440409 (+) 582 WP_237623781.1 hypothetical protein -
  ACFDA3_RS11510 (ACFDA3_11505) rpsR 2440502..2440744 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  ACFDA3_RS11515 (ACFDA3_11510) ssbA 2440789..2441298 (-) 510 WP_002447681.1 single-stranded DNA-binding protein Machinery gene
  ACFDA3_RS11520 (ACFDA3_11515) rpsF 2441321..2441617 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  ACFDA3_RS11525 (ACFDA3_11520) - 2442002..2442811 (+) 810 WP_325962242.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18671.19 Da        Isoelectric Point: 4.7078

>NTDB_id=1056086 ACFDA3_RS11515 WP_002447681.1 2440789..2441298(-) (ssbA) [Staphylococcus epidermidis strain PS08]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1056086 ACFDA3_RS11515 WP_002447681.1 2440789..2441298(-) (ssbA) [Staphylococcus epidermidis strain PS08]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379

Multiple sequence alignment