Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFDBA_RS11290 Genome accession   NZ_CP170250
Coordinates   2372639..2373148 (-) Length   169 a.a.
NCBI ID   WP_002447681.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain PS21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2367639..2378148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBA_RS11250 (ACFDBA_11245) - 2367768..2368391 (+) 624 WP_381413873.1 NDxxF motif lipoprotein -
  ACFDBA_RS11255 (ACFDBA_11250) - 2368607..2368984 (+) 378 WP_381413875.1 hypothetical protein -
  ACFDBA_RS11260 (ACFDBA_11255) - 2369342..2369932 (-) 591 WP_237617871.1 histidine phosphatase family protein -
  ACFDBA_RS11265 (ACFDBA_11260) - 2369953..2370585 (-) 633 WP_002447691.1 LysE family translocator -
  ACFDBA_RS11270 (ACFDBA_11265) - 2371058..2371312 (-) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ACFDBA_RS11275 (ACFDBA_11270) - 2371534..2371794 (+) 261 WP_002458611.1 hypothetical protein -
  ACFDBA_RS11280 (ACFDBA_11275) - 2371908..2372140 (+) 233 Protein_2172 XRE family transcriptional regulator -
  ACFDBA_RS11285 (ACFDBA_11280) rpsR 2372352..2372594 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  ACFDBA_RS11290 (ACFDBA_11285) ssbA 2372639..2373148 (-) 510 WP_002447681.1 single-stranded DNA-binding protein Machinery gene
  ACFDBA_RS11295 (ACFDBA_11290) rpsF 2373171..2373467 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  ACFDBA_RS11300 (ACFDBA_11295) - 2373852..2374661 (+) 810 WP_002447680.1 GH25 family lysozyme -
  ACFDBA_RS11305 (ACFDBA_11300) - 2374735..2374926 (+) 192 WP_001831355.1 hypothetical protein -
  ACFDBA_RS11310 (ACFDBA_11305) ychF 2375159..2376256 (-) 1098 WP_002447679.1 redox-regulated ATPase YchF -
  ACFDBA_RS11315 (ACFDBA_11310) - 2376268..2376471 (-) 204 WP_001831361.1 DUF951 domain-containing protein -
  ACFDBA_RS11320 (ACFDBA_11315) - 2376492..2377367 (-) 876 WP_002468622.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18671.19 Da        Isoelectric Point: 4.7078

>NTDB_id=1056053 ACFDBA_RS11290 WP_002447681.1 2372639..2373148(-) (ssbA) [Staphylococcus epidermidis strain PS21]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1056053 ACFDBA_RS11290 WP_002447681.1 2372639..2373148(-) (ssbA) [Staphylococcus epidermidis strain PS21]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACGTCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGGCCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379

Multiple sequence alignment