Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACLV7Z_RS09775 Genome accession   NZ_OZ217343
Coordinates   1963231..1963824 (-) Length   197 a.a.
NCBI ID   WP_000273417.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958231..1968824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS09750 (SMIG22_19280) - 1959286..1960230 (+) 945 WP_000815623.1 magnesium transporter CorA family protein -
  ACLV7Z_RS09755 (SMIG22_19290) - 1960242..1960919 (+) 678 WP_069289084.1 DUF1129 domain-containing protein -
  ACLV7Z_RS09760 (SMIG22_19300) - 1961170..1962204 (+) 1035 WP_218774026.1 S66 family peptidase -
  ACLV7Z_RS09765 (SMIG22_19310) - 1962310..1962573 (+) 264 WP_000166114.1 SemiSWEET family transporter -
  ACLV7Z_RS09770 (SMIG22_19320) - 1962658..1963221 (-) 564 WP_173234719.1 DNA-3-methyladenine glycosylase I -
  ACLV7Z_RS09775 (SMIG22_19330) ruvA 1963231..1963824 (-) 594 WP_000273417.1 Holliday junction branch migration protein RuvA Machinery gene
  ACLV7Z_RS09780 (SMIG22_19340) - 1964183..1964965 (-) 783 WP_218774025.1 sulfite exporter TauE/SafE family protein -
  ACLV7Z_RS09785 (SMIG22_19350) - 1964987..1965850 (-) 864 WP_411882179.1 formylglycine-generating enzyme family protein -
  ACLV7Z_RS09790 (SMIG22_19360) - 1965861..1967348 (-) 1488 WP_218774023.1 sulfatase -
  ACLV7Z_RS09795 (SMIG22_19370) - 1967367..1968182 (-) 816 WP_049513102.1 PTS system mannose/fructose/sorbose family transporter subunit IID -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21664.13 Da        Isoelectric Point: 6.2573

>NTDB_id=1056038 ACLV7Z_RS09775 WP_000273417.1 1963231..1963824(-) (ruvA) [Streptococcus mitis isolate S. mitis G22]
MYEYLKGIITKITAKYIVLETNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAHLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1056038 ACLV7Z_RS09775 WP_000273417.1 1963231..1963824(-) (ruvA) [Streptococcus mitis isolate S. mitis G22]
ATGTACGAATATTTAAAAGGAATCATTACCAAAATCACTGCTAAATACATTGTTCTTGAAACCAACGGTATCGGTTATAT
CCTGCATGTGGCCAATCCCTATGCTTACTCGGGACAGGTCAATCAGGAGGCTCAGATTTATGTGCATCAAGTCGTGCGTG
AGGACGCTCATCTGCTTTATGGATTTCGCTCAGAAGACGAGAAAAAACTCTTTCTCAGTCTGATTTCGGTCTCTGGGATT
GGTCCTGTATCAGCTCTTGCTATTATCGCTGCTGATGACAATGCTGGCTTGGTTCAAGCCATCGAAACCAAGAACATCAC
CTACTTGACCAAGTTTCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CAGGAGATGACCTTCCTGCCAAGGTGGCAGTGCAAGCAAGCGCTGAAAACCAAGAACTGGAAGAAGCTATGGAGGCCATG
TTGGCACTGGGCTACAAGGCAACCGAACTTAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAAAACTA
TATCAAGTCGGCTCTTAAAATGTTGGTTAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

99.492

100

0.995
  ruvA Streptococcus pneumoniae R6

98.985

100

0.99
  ruvA Streptococcus pneumoniae D39

98.985

100

0.99
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421