Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFDBD_RS11650 Genome accession   NZ_CP170249
Coordinates   2453779..2454288 (-) Length   169 a.a.
NCBI ID   WP_002447681.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain HS01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2448779..2459288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDBD_RS11615 (ACFDBD_11610) - 2449607..2449966 (-) 360 WP_002496090.1 rhodanese-like domain-containing protein -
  ACFDBD_RS11620 (ACFDBD_11615) - 2449959..2450477 (-) 519 WP_002496089.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACFDBD_RS11625 (ACFDBD_11620) - 2450617..2450961 (-) 345 WP_002447685.1 DUF4260 domain-containing protein -
  ACFDBD_RS11630 (ACFDBD_11625) - 2451797..2452387 (-) 591 WP_002447684.1 type 1 glutamine amidotransferase family protein -
  ACFDBD_RS11635 (ACFDBD_11630) - 2452768..2453024 (-) 257 Protein_2242 terminase small subunit -
  ACFDBD_RS11640 (ACFDBD_11635) - 2453032..2453267 (+) 236 Protein_2243 Abi family protein -
  ACFDBD_RS11645 (ACFDBD_11640) rpsR 2453492..2453734 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  ACFDBD_RS11650 (ACFDBD_11645) ssbA 2453779..2454288 (-) 510 WP_002447681.1 single-stranded DNA-binding protein Machinery gene
  ACFDBD_RS11655 (ACFDBD_11650) rpsF 2454311..2454607 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  ACFDBD_RS11660 (ACFDBD_11655) - 2454992..2455801 (+) 810 WP_002447680.1 GH25 family lysozyme -
  ACFDBD_RS11665 (ACFDBD_11660) - 2455875..2456066 (+) 192 WP_001831355.1 hypothetical protein -
  ACFDBD_RS11670 (ACFDBD_11665) ychF 2456260..2457357 (-) 1098 WP_002447679.1 redox-regulated ATPase YchF -
  ACFDBD_RS11675 (ACFDBD_11670) - 2457357..2457572 (-) 216 WP_002447678.1 DUF951 domain-containing protein -
  ACFDBD_RS11680 (ACFDBD_11675) - 2457593..2458468 (-) 876 WP_002468622.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18671.19 Da        Isoelectric Point: 4.7078

>NTDB_id=1056021 ACFDBD_RS11650 WP_002447681.1 2453779..2454288(-) (ssbA) [Staphylococcus epidermidis strain HS01]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1056021 ACFDBD_RS11650 WP_002447681.1 2453779..2454288(-) (ssbA) [Staphylococcus epidermidis strain HS01]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379

Multiple sequence alignment