Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFDA5_RS12040 Genome accession   NZ_CP170246
Coordinates   2497394..2497903 (-) Length   169 a.a.
NCBI ID   WP_002447681.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain Q8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2492394..2502903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDA5_RS12000 (ACFDA5_11995) - 2492400..2493023 (+) 624 WP_002447695.1 NDxxF motif lipoprotein -
  ACFDA5_RS12005 (ACFDA5_12000) - 2493240..2493617 (+) 378 WP_002458608.1 hypothetical protein -
  ACFDA5_RS12010 (ACFDA5_12005) - 2494087..2494677 (-) 591 WP_002490239.1 histidine phosphatase family protein -
  ACFDA5_RS12015 (ACFDA5_12010) - 2494698..2495330 (-) 633 WP_002447691.1 LysE family translocator -
  ACFDA5_RS12020 (ACFDA5_12015) - 2495803..2496057 (-) 255 WP_001832461.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ACFDA5_RS12025 (ACFDA5_12020) - 2496279..2496539 (+) 261 WP_002458611.1 hypothetical protein -
  ACFDA5_RS12030 (ACFDA5_12025) - 2496653..2496851 (+) 199 Protein_2320 XRE family transcriptional regulator -
  ACFDA5_RS12035 (ACFDA5_12030) rpsR 2497107..2497349 (-) 243 WP_001831354.1 30S ribosomal protein S18 -
  ACFDA5_RS12040 (ACFDA5_12035) ssbA 2497394..2497903 (-) 510 WP_002447681.1 single-stranded DNA-binding protein Machinery gene
  ACFDA5_RS12045 (ACFDA5_12040) rpsF 2497926..2498222 (-) 297 WP_001831345.1 30S ribosomal protein S6 -
  ACFDA5_RS12050 (ACFDA5_12045) - 2498646..2499416 (+) 771 WP_381411910.1 GH25 family lysozyme -
  ACFDA5_RS12055 (ACFDA5_12050) - 2499490..2499681 (+) 192 WP_001831355.1 hypothetical protein -
  ACFDA5_RS12060 (ACFDA5_12055) ychF 2499914..2501011 (-) 1098 WP_002447679.1 redox-regulated ATPase YchF -
  ACFDA5_RS12065 (ACFDA5_12060) - 2501011..2501226 (-) 216 WP_002447678.1 DUF951 domain-containing protein -
  ACFDA5_RS12070 (ACFDA5_12065) - 2501247..2502122 (-) 876 WP_002458618.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18671.19 Da        Isoelectric Point: 4.7078

>NTDB_id=1055919 ACFDA5_RS12040 WP_002447681.1 2497394..2497903(-) (ssbA) [Staphylococcus epidermidis strain Q8]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1055919 ACFDA5_RS12040 WP_002447681.1 2497394..2497903(-) (ssbA) [Staphylococcus epidermidis strain Q8]
ATGTTAAATCGAGTTGTATTAGTAGGTCGTCTAACGAAAGATCCAGAATACAGAACCACACCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCTGACTTTATTAACTGTGTAGTCT
TCCGTAGACAAGCAGAAAATGTAAATAACTACTTGTCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAATCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATTTTTGTTACTGAAGTCGTATGTGATAGTGTTCAATTCCTTGAACCTAAAAA
CGCACAACAAGGTGGCCAACGTTCACAGAACAATAATTTCCAAGACTACGGTCAAGGATTTGGTGGTCAGCAATCAGGAC
AAAATACATCTTACAACAACAATAATTCATCAAACTCAAATCAGTCGGATAATCCGTTTGCAAATGCTAATGGACCGATT
GATATCAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.607

100

0.68
  ssb Latilactobacillus sakei subsp. sakei 23K

55.747

100

0.574
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.143

66.272

0.379

Multiple sequence alignment