Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   ACLV65_RS01545 Genome accession   NZ_OZ217342
Coordinates   285852..286751 (+) Length   299 a.a.
NCBI ID   WP_411864350.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 280852..291751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS01535 (SMIB22_02950) - 284447..285220 (+) 774 WP_411864349.1 TatD family hydrolase -
  ACLV65_RS01540 (SMIB22_02960) rnmV 285220..285780 (+) 561 WP_049521364.1 ribonuclease M5 -
  ACLV65_RS01545 (SMIB22_02970) comR 285852..286751 (+) 900 WP_411864350.1 XRE family transcriptional regulator Regulator
  ACLV65_RS01550 (SMIB22_02990) - 287020..289050 (+) 2031 WP_411864351.1 bacteriocin-associated integral membrane family protein -
  ACLV65_RS01555 (SMIB22_03000) - 289052..289693 (+) 642 WP_000565529.1 ABC transporter ATP-binding protein -
  ACLV65_RS01560 (SMIB22_03010) - 289686..289994 (+) 309 WP_000333263.1 hypothetical protein -
  ACLV65_RS01565 (SMIB22_03020) rsmA 290115..290987 (+) 873 WP_411864352.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35407.19 Da        Isoelectric Point: 4.7618

>NTDB_id=1055830 ACLV65_RS01545 WP_411864350.1 285852..286751(+) (comR) [Streptococcus mitis isolate S. mitis B22]
MLIGQKIKEIRTEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPAYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMPQIIEKEVYSINDMLL
IRLFFYQILIRKDLAKFMNQIEKLMFFLLEQKKVTQLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALRVERDFSLAESFYQSSKIFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1055830 ACLV65_RS01545 WP_411864350.1 285852..286751(+) (comR) [Streptococcus mitis isolate S. mitis B22]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGACAGAAAAAGGAATTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGACTATATTGCTCGCC
GGCTAGGAGTTCCAGCTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAAGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGCCTCAGATCATAGAAAAAGAAGTTTATTCAATAAATGATATGTTATTG
ATTCGTTTGTTTTTTTATCAAATACTCATTAGAAAAGATCTTGCCAAATTTATGAATCAAATCGAAAAGCTAATGTTCTT
TCTTTTAGAACAGAAGAAGGTAACTCAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGCTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCCCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGTAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAATATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTAAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

38.095

98.328

0.375
  comR Streptococcus suis P1/7

37.801

97.324

0.368
  comR Streptococcus suis 05ZYH33

37.801

97.324

0.368
  comR Streptococcus pyogenes MGAS8232

36.242

99.666

0.361