Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ACFDHY_RS07500 Genome accession   NZ_CP170216
Coordinates   1454626..1455255 (-) Length   209 a.a.
NCBI ID   WP_167694563.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC393     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1449626..1460255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHY_RS07465 (ACFDHY_07465) - 1449701..1450219 (-) 519 WP_039644807.1 acyl-CoA thioesterase -
  ACFDHY_RS07470 (ACFDHY_07470) - 1450233..1451468 (-) 1236 WP_305851431.1 aminopeptidase -
  ACFDHY_RS07475 (ACFDHY_07475) - 1451485..1451694 (-) 210 WP_039644804.1 DUF1128 family protein -
  ACFDHY_RS07480 (ACFDHY_07480) - 1451827..1452285 (+) 459 WP_039644802.1 low molecular weight protein-tyrosine-phosphatase -
  ACFDHY_RS07485 (ACFDHY_07485) - 1452292..1452567 (+) 276 WP_039644801.1 hypothetical protein -
  ACFDHY_RS07490 (ACFDHY_07490) - 1452687..1453958 (+) 1272 WP_107633458.1 YihY/virulence factor BrkB family protein -
  ACFDHY_RS07495 (ACFDHY_07495) - 1453993..1454562 (+) 570 WP_039644796.1 carbonic anhydrase -
  ACFDHY_RS07500 (ACFDHY_07500) vraR 1454626..1455255 (-) 630 WP_167694563.1 response regulator transcription factor Regulator
  ACFDHY_RS07505 (ACFDHY_07505) vraS 1455245..1456288 (-) 1044 WP_039644794.1 sensor histidine kinase Regulator
  ACFDHY_RS07510 (ACFDHY_07510) liaF 1456285..1456986 (-) 702 WP_107633459.1 cell wall-active antibiotics response protein LiaF -
  ACFDHY_RS07515 (ACFDHY_07515) - 1456999..1457385 (-) 387 WP_052257806.1 hypothetical protein -
  ACFDHY_RS07520 (ACFDHY_07520) map 1457484..1458242 (-) 759 WP_107633460.1 type I methionyl aminopeptidase -
  ACFDHY_RS07525 (ACFDHY_07525) - 1458536..1459561 (+) 1026 WP_039644788.1 aromatic acid exporter family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23539.23 Da        Isoelectric Point: 5.6500

>NTDB_id=1055562 ACFDHY_RS07500 WP_167694563.1 1454626..1455255(-) (vraR) [Staphylococcus hyicus strain SC393]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAITKAHKLQPDLILMDLVMTDMDGVEATTQIKKDLPRIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTHKGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1055562 ACFDHY_RS07500 WP_167694563.1 1454626..1455255(-) (vraR) [Staphylococcus hyicus strain SC393]
ATGACAATTAAAGTATTATTTGTGGATGATCATGAAATGGTAAGAATTGGAATATCAAGTTATCTTTCAACTCAACCAGA
TATTGAAGTAGTTGGTGAAGGAGCATCGGGTAAAGAAGCGATTACGAAGGCGCATAAACTTCAACCGGATTTGATTTTAA
TGGACTTAGTGATGACAGATATGGATGGTGTAGAAGCGACGACTCAAATTAAAAAAGATTTACCACGTATTAAAGTCGTG
ATGCTTACAAGCTATATTGAAGATAAAGAAGTTTACCGTGCGTTAGATGCAGGGGTGGACAGTTATATATTAAAAACAAC
AAGTGCAAGCGATATAGCCGAAGCAATTCGTAAAACACATAAAGGTGAATCTGTTTTTGAAGCTGAAGTGCTAGTGAAAA
TGCGAAATCGTATGAGACAAAGAGCAGAACTTTATGAATTATTAACGGAACGTGAAATGGAAATATTGTTACTGATTTCC
AAAGGTTACTCAAATCAGGAAATTGCGAGTGCCTCTCATATTACGATAAAGACGGTAAAAACGCATGTCAGTAACATTTT
AAGTAAGCTTGAAGTACAAGACCGTACACAAGCAGTTATCTATGCCTTTCAACATGGCTTAATTGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

89.952

100

0.9
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383

Multiple sequence alignment