Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   ACFDHY_RS07505 Genome accession   NZ_CP170216
Coordinates   1455245..1456288 (-) Length   347 a.a.
NCBI ID   WP_039644794.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC393     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1450245..1461288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHY_RS07475 (ACFDHY_07475) - 1451485..1451694 (-) 210 WP_039644804.1 DUF1128 family protein -
  ACFDHY_RS07480 (ACFDHY_07480) - 1451827..1452285 (+) 459 WP_039644802.1 low molecular weight protein-tyrosine-phosphatase -
  ACFDHY_RS07485 (ACFDHY_07485) - 1452292..1452567 (+) 276 WP_039644801.1 hypothetical protein -
  ACFDHY_RS07490 (ACFDHY_07490) - 1452687..1453958 (+) 1272 WP_107633458.1 YihY/virulence factor BrkB family protein -
  ACFDHY_RS07495 (ACFDHY_07495) - 1453993..1454562 (+) 570 WP_039644796.1 carbonic anhydrase -
  ACFDHY_RS07500 (ACFDHY_07500) vraR 1454626..1455255 (-) 630 WP_167694563.1 response regulator transcription factor Regulator
  ACFDHY_RS07505 (ACFDHY_07505) vraS 1455245..1456288 (-) 1044 WP_039644794.1 sensor histidine kinase Regulator
  ACFDHY_RS07510 (ACFDHY_07510) liaF 1456285..1456986 (-) 702 WP_107633459.1 cell wall-active antibiotics response protein LiaF -
  ACFDHY_RS07515 (ACFDHY_07515) - 1456999..1457385 (-) 387 WP_052257806.1 hypothetical protein -
  ACFDHY_RS07520 (ACFDHY_07520) map 1457484..1458242 (-) 759 WP_107633460.1 type I methionyl aminopeptidase -
  ACFDHY_RS07525 (ACFDHY_07525) - 1458536..1459561 (+) 1026 WP_039644788.1 aromatic acid exporter family protein -
  ACFDHY_RS07530 (ACFDHY_07530) - 1459673..1460404 (-) 732 WP_039644786.1 type 1 glutamine amidotransferase -

Sequence


Protein


Download         Length: 347 a.a.        Molecular weight: 39865.89 Da        Isoelectric Point: 4.8594

>NTDB_id=1055563 ACFDHY_RS07505 WP_039644794.1 1455245..1456288(-) (vraS) [Staphylococcus hyicus strain SC393]
MNQYVRSIGSMLILVYSLFTAFFFIDNVFTNIIFFQGMFYTQIFGIPVFLFLNLITIFLCIIVGSVLAYKNNQQSDWLKA
QIERAIEGETVGVNDQQIEIYLETLELYEALVPLNQELHRMRIKTQNLTNESYNMNDSKVQKIIEDERHRLARELHDSVS
QQLFAASMMLSAIKETPLDPPLNQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIQTLVSDLQRKVPLKVVQDI
GEFDVPKGMEDHLFRITQEAISNTLRHSKGTEVTVELLQREDYILLRIQDDGIGFNVDEKMEQSYGLKNMRERAMEIGAT
FHIVSLPDSGTRIEVKAPLDKEGHNDN

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1055563 ACFDHY_RS07505 WP_039644794.1 1455245..1456288(-) (vraS) [Staphylococcus hyicus strain SC393]
ATGAATCAATATGTACGATCGATAGGTTCAATGCTAATACTTGTGTATAGTTTATTTACAGCTTTCTTTTTTATCGACAA
TGTTTTCACAAATATCATTTTTTTCCAAGGCATGTTTTATACGCAAATATTTGGGATTCCAGTATTTTTGTTTTTAAACC
TTATTACTATATTTTTATGTATTATCGTAGGAAGTGTGCTTGCATATAAAAACAATCAACAAAGCGATTGGTTGAAGGCG
CAAATTGAGCGTGCCATTGAAGGTGAAACGGTAGGTGTCAATGATCAACAAATCGAAATTTATCTAGAAACGTTAGAACT
TTATGAAGCATTAGTGCCACTTAATCAAGAATTACATCGCATGCGCATTAAAACACAAAATTTAACGAATGAGTCTTACA
ATATGAATGACTCAAAAGTACAAAAAATTATTGAGGATGAACGACATCGCCTTGCTAGAGAATTACATGATAGCGTGTCA
CAACAATTATTTGCGGCAAGCATGATGCTTTCAGCAATTAAAGAAACACCTTTAGATCCACCTTTGAACCAGCAAATACC
GACACTTGAAAAAATGGTCCAGGATTCACAACTTGAAATGCGCGCACTCTTGTTACATTTACGACCTATAGGATTGAAGG
ACAAGTCATTAGGAGAAGGCATTCAAACTTTAGTTAGTGATCTTCAGCGTAAGGTACCTTTAAAAGTCGTGCAAGATATT
GGTGAGTTTGATGTTCCAAAAGGTATGGAAGATCATTTGTTTAGAATTACCCAAGAAGCCATTTCTAATACATTACGTCA
TTCTAAAGGGACTGAAGTGACCGTAGAATTATTACAACGTGAAGATTACATACTGTTACGTATTCAAGATGATGGTATTG
GCTTTAATGTTGATGAAAAAATGGAACAAAGCTATGGCTTGAAAAATATGCGTGAGCGCGCAATGGAAATAGGCGCTACA
TTTCATATCGTATCTTTACCTGACTCAGGAACGAGAATTGAAGTGAAAGCACCATTAGACAAGGAGGGGCACAATGACAA
TTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

81.556

100

0.816


Multiple sequence alignment