Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   LMH68_RS09415 Genome accession   NZ_CP170175
Coordinates   2061422..2062054 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio sp. F13 strain 10N.222.55.B3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2056422..2067054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH68_RS09400 (LMH68_009400) astA 2057717..2058736 (+) 1020 WP_017061116.1 arginine N-succinyltransferase -
  LMH68_RS09405 (LMH68_009405) astD 2058776..2060233 (+) 1458 WP_229647427.1 succinylglutamate-semialdehyde dehydrogenase -
  LMH68_RS09410 (LMH68_009410) - 2060447..2061238 (+) 792 WP_413755009.1 DUF1338 domain-containing protein -
  LMH68_RS09415 (LMH68_009415) crp 2061422..2062054 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  LMH68_RS09420 (LMH68_009420) - 2062294..2063163 (-) 870 WP_010435210.1 phosphoribulokinase -
  LMH68_RS09425 (LMH68_009425) - 2063241..2063453 (-) 213 WP_229647428.1 YheU family protein -
  LMH68_RS09430 (LMH68_009430) - 2063549..2064541 (-) 993 WP_019825349.1 hydrolase -
  LMH68_RS09435 (LMH68_009435) - 2064749..2065219 (-) 471 WP_017066206.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=1055445 LMH68_RS09415 WP_004729651.1 2061422..2062054(-) (crp) [Vibrio sp. F13 strain 10N.222.55.B3]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=1055445 LMH68_RS09415 WP_004729651.1 2061422..2062054(-) (crp) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGATGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACCGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment