Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACE38K_RS04925 Genome accession   NZ_CP170101
Coordinates   994504..995133 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli BL21     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 989504..1000133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE38K_RS04905 ycbZ 989905..991665 (-) 1761 WP_000156531.1 Lon protease family protein -
  ACE38K_RS04910 matP 991851..992303 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACE38K_RS04915 ompA 992379..993419 (-) 1041 WP_000750416.1 porin OmpA -
  ACE38K_RS04920 sulA 993776..994285 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACE38K_RS04925 sxy/tfoX 994504..995133 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACE38K_RS04930 yccS 995096..997258 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ACE38K_RS04935 yccF 997268..997714 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACE38K_RS04940 helD 997837..999891 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1055050 ACE38K_RS04925 WP_000839153.1 994504..995133(+) (sxy/tfoX) [Escherichia coli BL21]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1055050 ACE38K_RS04925 WP_000839153.1 994504..995133(+) (sxy/tfoX) [Escherichia coli BL21]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment