Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACNUDU_RS08440 Genome accession   NZ_OZ197099
Coordinates   1658040..1658642 (+) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus isolate 23S00079-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1653040..1663642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDU_RS08410 mreD 1653830..1654360 (+) 531 WP_001259929.1 rod shape-determining protein MreD -
  ACNUDU_RS08415 rplU 1654847..1655155 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  ACNUDU_RS08420 - 1655161..1655481 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  ACNUDU_RS08425 rpmA 1655493..1655777 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  ACNUDU_RS08430 obgE 1656266..1657558 (+) 1293 WP_000496090.1 GTPase ObgE -
  ACNUDU_RS08435 - 1657571..1658026 (+) 456 WP_000368902.1 ACT domain-containing protein -
  ACNUDU_RS08440 ruvA 1658040..1658642 (+) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  ACNUDU_RS08445 ruvB 1658674..1659678 (+) 1005 WP_001005766.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACNUDU_RS08450 queA 1659680..1660705 (+) 1026 WP_001019177.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACNUDU_RS08455 tgt 1660728..1661867 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  ACNUDU_RS08460 yajC 1661886..1662146 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=1055050 ACNUDU_RS08440 WP_000271547.1 1658040..1658642(+) (ruvA) [Staphylococcus aureus isolate 23S00079-1]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1055050 ACNUDU_RS08440 WP_000271547.1 1658040..1658642(+) (ruvA) [Staphylococcus aureus isolate 23S00079-1]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAGCGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425

Multiple sequence alignment