Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BCS84_RS02850 | Genome accession | NZ_CP170046 |
| Coordinates | 608747..609376 (+) | Length | 209 a.a. |
| NCBI ID | WP_010435284.1 | Uniprot ID | A0AAN0LMD0 |
| Organism | Vibrio cyclitrophicus strain 10N.222.45.E8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 603747..614376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCS84_RS02835 (BCS84_02835) | - | 604421..606979 (-) | 2559 | WP_010435294.1 | penicillin-binding protein 1A | - |
| BCS84_RS02840 (BCS84_02840) | pilM | 607131..608156 (+) | 1026 | WP_016767986.1 | type IV pilus assembly protein PilM | Machinery gene |
| BCS84_RS02845 (BCS84_02845) | pilN | 608140..608754 (+) | 615 | WP_010435288.1 | PilN domain-containing protein | Machinery gene |
| BCS84_RS02850 (BCS84_02850) | pilO | 608747..609376 (+) | 630 | WP_010435284.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BCS84_RS02855 (BCS84_02855) | pilP | 609363..609881 (+) | 519 | WP_010435282.1 | pilus assembly protein PilP | Machinery gene |
| BCS84_RS02860 (BCS84_02860) | pilQ | 609941..611632 (+) | 1692 | WP_016787694.1 | type IV pilus secretin PilQ | Machinery gene |
| BCS84_RS02865 (BCS84_02865) | aroK | 611809..612327 (+) | 519 | WP_009848907.1 | shikimate kinase AroK | - |
| BCS84_RS02870 (BCS84_02870) | aroB | 612352..613440 (+) | 1089 | WP_010435273.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24324.99 Da Isoelectric Point: 4.9074
>NTDB_id=1054915 BCS84_RS02850 WP_010435284.1 608747..609376(+) (pilO) [Vibrio cyclitrophicus strain 10N.222.45.E8]
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 630 bp
>NTDB_id=1054915 BCS84_RS02850 WP_010435284.1 608747..609376(+) (pilO) [Vibrio cyclitrophicus strain 10N.222.45.E8]
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATG
GCCGTTACTGCCTCAATTACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGC
CTTTGGACGATGAGCTACAGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCA
AAAGGAGCTGGCCAGCATGTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGG
GGCAGAAGCAAAACAAAGCGTTTCTGTATCGGTTACCTCTCAATATCGAGTTGACGGGTGACTATCATGAGATTGGTGAT
TTCTCGGCGGCCATCGCTAAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATG
GCCGTTACTGCCTCAATTACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGC
CTTTGGACGATGAGCTACAGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCA
AAAGGAGCTGGCCAGCATGTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGG
GGCAGAAGCAAAACAAAGCGTTTCTGTATCGGTTACCTCTCAATATCGAGTTGACGGGTGACTATCATGAGATTGGTGAT
TTCTCGGCGGCCATCGCTAAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
76.684 |
92.344 |
0.708 |
| pilO | Vibrio campbellii strain DS40M4 |
74.054 |
88.517 |
0.656 |