Detailed information NTG1054324

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCV24_RS02270
• Genome accession: NZ_CP170005
• Coordinates: 442677..443546 (-)
• Length: 289 a.a.
• NCBI ID: WP_016768203.1
• Uniprot ID: A0AAN0LNW9
• Organism: Vibrio cyclitrophicus strain 10N.286.54.F9
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 437677..448546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV24_RS02235 (BCV24_02235)	rpsP	438700..438948 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
BCV24_RS02240 (BCV24_02240)	rimM	438973..439527 (+)	555	WP_016768202.1	ribosome maturation factor RimM	-
BCV24_RS02245 (BCV24_02245)	trmD	439554..440294 (+)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BCV24_RS02250 (BCV24_02250)	rplS	440354..440707 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
BCV24_RS02255 (BCV24_02255)	yacG	441014..441211 (-)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
BCV24_RS02260 (BCV24_02260)	zapD	441293..442033 (-)	741	WP_010435917.1	cell division protein ZapD	-
BCV24_RS02265 (BCV24_02265)	coaE	442060..442674 (-)	615	WP_010435920.1	dephospho-CoA kinase	-
BCV24_RS02270 (BCV24_02270)	pilD	442677..443546 (-)	870	WP_016768203.1	prepilin peptidase	Machinery gene
BCV24_RS02275 (BCV24_02275)	pilC	443613..444842 (-)	1230	WP_016768204.1	type II secretion system F family protein	Machinery gene
BCV24_RS02280 (BCV24_02280)	pilB	444857..446542 (-)	1686	WP_016787826.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCV24_RS02285 (BCV24_02285)	pilA	446542..446955 (-)	414	WP_016787825.1	pilin	Machinery gene
BCV24_RS02290 (BCV24_02290)	nadC	447210..448100 (-)	891	WP_016783773.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32578.79 Da
• Isoelectric Point: 7.9444

>NTDB_id=1054324 BCV24_RS02270 WP_016768203.1 442677..443546(-) (pilD) [Vibrio cyclitrophicus strain 10N.286.54.F9]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCRSCTNPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054324 BCV24_RS02270 WP_016768203.1 442677..443546(-) (pilD) [Vibrio cyclitrophicus strain 10N.286.54.F9]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCGCAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACAGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	73.702	100	0.737
pilD	Vibrio cholerae strain A1552	69.097	99.654	0.689
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446