Detailed information NTG1053978

Bioinformatically predicted

Overview

• Name: comGD
• Type: Machinery gene
• Locus tag: ACEZ45_RS11970
• Genome accession: NZ_CP169877
• Coordinates: 2472530..2472967 (-)
• Length: 145 a.a.
• NCBI ID: WP_003153088.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JF
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2467530..2477967

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEZ45_RS11920 (ACEZ45_11920)	sinI	2467915..2468088 (+)	174	WP_003153105.1	anti-repressor SinI	Regulator
ACEZ45_RS11925 (ACEZ45_11925)	sinR	2468122..2468457 (+)	336	WP_003153104.1	transcriptional regulator SinR	Regulator
ACEZ45_RS11930 (ACEZ45_11930)	tasA	2468505..2469290 (-)	786	WP_003153102.1	biofilm matrix protein TasA	-
ACEZ45_RS11935 (ACEZ45_11935)	sipW	2469354..2469938 (-)	585	WP_003153100.1	signal peptidase I SipW	-
ACEZ45_RS11940 (ACEZ45_11940)	tapA	2469910..2470581 (-)	672	WP_046341384.1	amyloid fiber anchoring/assembly protein TapA	-
ACEZ45_RS11945 (ACEZ45_11945)	-	2470840..2471169 (+)	330	WP_003153097.1	DUF3889 domain-containing protein	-
ACEZ45_RS11950 (ACEZ45_11950)	-	2471209..2471388 (-)	180	WP_003153093.1	YqzE family protein	-
ACEZ45_RS11955 (ACEZ45_11955)	comGG	2471445..2471822 (-)	378	WP_003153092.1	competence type IV pilus minor pilin ComGG	Machinery gene
ACEZ45_RS11960 (ACEZ45_11960)	comGF	2471823..2472218 (-)	396	WP_003153090.1	competence type IV pilus minor pilin ComGF	-
ACEZ45_RS11965 (ACEZ45_11965)	comGE	2472232..2472546 (-)	315	WP_046341385.1	competence type IV pilus minor pilin ComGE	-
ACEZ45_RS11970 (ACEZ45_11970)	comGD	2472530..2472967 (-)	438	WP_003153088.1	competence type IV pilus minor pilin ComGD	Machinery gene
ACEZ45_RS11975 (ACEZ45_11975)	comGC	2472957..2473265 (-)	309	WP_003153087.1	competence type IV pilus major pilin ComGC	Machinery gene
ACEZ45_RS11980 (ACEZ45_11980)	comGB	2473270..2474307 (-)	1038	WP_003153086.1	competence type IV pilus assembly protein ComGB	Machinery gene
ACEZ45_RS11985 (ACEZ45_11985)	comGA	2474294..2475364 (-)	1071	WP_003153083.1	competence type IV pilus ATPase ComGA	Machinery gene
ACEZ45_RS11990 (ACEZ45_11990)	-	2475556..2476506 (-)	951	WP_003153082.1	magnesium transporter CorA family protein	-
ACEZ45_RS11995 (ACEZ45_11995)	-	2476652..2477953 (+)	1302	WP_014305416.1	hemolysin family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16324.85 Da
• Isoelectric Point: 10.3725

>NTDB_id=1053978 ACEZ45_RS11970 WP_003153088.1 2472530..2472967(-) (comGD) [Bacillus amyloliquefaciens strain JF]
MNNNRRTENGFTLLESLIVLSLASVLLTVLFTTVPPVCTHLAVRQKTEQLQKDIQLAQETAIAEHKRTKITFLPREHKYK
LQSAGRIVERSFDSLHITLVTLPESLEFNEKGHPNSGGKIRLKSAGFTYEITVYLGSGNVHAKRK

Nucleotide

• Length: 438 bp

>NTDB_id=1053978 ACEZ45_RS11970 WP_003153088.1 2472530..2472967(-) (comGD) [Bacillus amyloliquefaciens strain JF]
TTGAACAATAACAGGCGGACAGAAAACGGGTTTACCCTTCTTGAAAGCCTGATTGTGTTAAGCCTGGCGTCCGTCCTGCT
GACGGTTTTGTTCACGACGGTTCCGCCGGTCTGCACCCACCTTGCCGTGCGGCAAAAAACAGAACAGCTTCAAAAAGATA
TTCAGCTTGCGCAGGAAACGGCTATCGCAGAACATAAAAGAACAAAAATCACTTTTCTTCCAAGAGAGCATAAATACAAA
CTGCAGTCAGCCGGAAGGATTGTCGAGCGTTCTTTTGATTCGCTTCACATTACACTTGTGACTTTACCGGAGAGCCTTGA
ATTTAACGAAAAAGGCCATCCGAATTCGGGAGGAAAGATTCGATTGAAGAGCGCCGGGTTCACCTATGAGATCACAGTTT
ACTTAGGGAGCGGAAATGTCCATGCTAAACGGAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (5-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGD	Bacillus subtilis subsp. subtilis str. 168	54.795	100	0.552