Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACNUDX_RS07865 Genome accession   NZ_OZ197084
Coordinates   1589123..1590094 (+) Length   323 a.a.
NCBI ID   WP_000876311.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01952-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1584123..1595094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDX_RS07850 nrdI 1585196..1585594 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  ACNUDX_RS07855 nrdE 1585557..1587662 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  ACNUDX_RS07860 nrdF 1587782..1588753 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  ACNUDX_RS07865 ceuB 1589123..1590094 (+) 972 WP_000876311.1 ABC transporter permease Machinery gene
  ACNUDX_RS07870 - 1590081..1591037 (+) 957 WP_001245567.1 iron chelate uptake ABC transporter family permease subunit -
  ACNUDX_RS07875 - 1591034..1591795 (+) 762 WP_000616865.1 ABC transporter ATP-binding protein -
  ACNUDX_RS07880 - 1591914..1592942 (+) 1029 WP_374731583.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  ACNUDX_RS07885 - 1593259..1593573 (-) 315 WP_001123293.1 CHY zinc finger protein -
  ACNUDX_RS07890 murB 1593591..1594514 (-) 924 WP_000608436.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35558.04 Da        Isoelectric Point: 10.1963

>NTDB_id=1053976 ACNUDX_RS07865 WP_000876311.1 1589123..1590094(+) (ceuB) [Staphylococcus aureus isolate 23S01952-1]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=1053976 ACNUDX_RS07865 WP_000876311.1 1589123..1590094(+) (ceuB) [Staphylococcus aureus isolate 23S01952-1]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGCCGAATACCGAGAACGA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATCTCATTACGT
ACAAACGCAGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATCTTGTA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCAAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATCAATATTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTCGTG
ACAGTTGGAACTTTACCCTTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTAAAAAATGC
AATTCCTCATACGATGATGTTAGGTGCCATCTTTGTATTGTTTTCTGATATAGTTGGCAGAATTGTAGTTTATCCATATG
AAATTAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTACTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.812

99.071

0.474

Multiple sequence alignment