Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACEZ45_RS11925 Genome accession   NZ_CP169877
Coordinates   2468122..2468457 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JF     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2463122..2473457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZ45_RS11905 (ACEZ45_11905) gcvT 2463733..2464833 (-) 1101 WP_069473502.1 glycine cleavage system aminomethyltransferase GcvT -
  ACEZ45_RS11910 (ACEZ45_11910) - 2465256..2466926 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  ACEZ45_RS11915 (ACEZ45_11915) - 2466944..2467738 (+) 795 WP_069473503.1 YqhG family protein -
  ACEZ45_RS11920 (ACEZ45_11920) sinI 2467915..2468088 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACEZ45_RS11925 (ACEZ45_11925) sinR 2468122..2468457 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACEZ45_RS11930 (ACEZ45_11930) tasA 2468505..2469290 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  ACEZ45_RS11935 (ACEZ45_11935) sipW 2469354..2469938 (-) 585 WP_003153100.1 signal peptidase I SipW -
  ACEZ45_RS11940 (ACEZ45_11940) tapA 2469910..2470581 (-) 672 WP_046341384.1 amyloid fiber anchoring/assembly protein TapA -
  ACEZ45_RS11945 (ACEZ45_11945) - 2470840..2471169 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  ACEZ45_RS11950 (ACEZ45_11950) - 2471209..2471388 (-) 180 WP_003153093.1 YqzE family protein -
  ACEZ45_RS11955 (ACEZ45_11955) comGG 2471445..2471822 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACEZ45_RS11960 (ACEZ45_11960) comGF 2471823..2472218 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  ACEZ45_RS11965 (ACEZ45_11965) comGE 2472232..2472546 (-) 315 WP_046341385.1 competence type IV pilus minor pilin ComGE -
  ACEZ45_RS11970 (ACEZ45_11970) comGD 2472530..2472967 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACEZ45_RS11975 (ACEZ45_11975) comGC 2472957..2473265 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1053976 ACEZ45_RS11925 WP_003153104.1 2468122..2468457(+) (sinR) [Bacillus amyloliquefaciens strain JF]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1053976 ACEZ45_RS11925 WP_003153104.1 2468122..2468457(+) (sinR) [Bacillus amyloliquefaciens strain JF]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment