Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS10_RS15270 Genome accession   NZ_CP169869
Coordinates   3262810..3263220 (-) Length   136 a.a.
NCBI ID   WP_002067305.1    Uniprot ID   A0A333UQE7
Organism   Acinetobacter baumannii strain Up280     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3257810..3268220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS10_RS15240 - 3257896..3258165 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABUS10_RS15245 rapZ 3258162..3259013 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS10_RS15250 panC 3259036..3259884 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS10_RS15255 panB 3259888..3260697 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS10_RS15260 folK 3260743..3261225 (-) 483 WP_000219216.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS10_RS15265 pcnB 3261222..3262685 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABUS10_RS15270 comEA 3262810..3263220 (-) 411 WP_002067305.1 ComEA family DNA-binding protein Machinery gene
  ABUS10_RS15275 mazG 3263189..3263995 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS10_RS15280 - 3264107..3264880 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  ABUS10_RS15285 - 3264925..3267231 (-) 2307 WP_000259112.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.96 Da        Isoelectric Point: 10.4475

>NTDB_id=1053869 ABUS10_RS15270 WP_002067305.1 3262810..3263220(-) (comEA) [Acinetobacter baumannii strain Up280]
MQYSMRFWKNKYFLLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053869 ABUS10_RS15270 WP_002067305.1 3262810..3263220(-) (comEA) [Acinetobacter baumannii strain Up280]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A333UQE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412

Multiple sequence alignment