Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS39_RS15655 Genome accession   NZ_CP169859
Coordinates   3235144..3235554 (-) Length   136 a.a.
NCBI ID   WP_025466948.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Rp772     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3230144..3240554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS39_RS15625 - 3230230..3230499 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABUS39_RS15630 rapZ 3230496..3231347 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS39_RS15635 panC 3231370..3232218 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS39_RS15640 panB 3232222..3233031 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS39_RS15645 folK 3233077..3233559 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS39_RS15650 pcnB 3233556..3235019 (-) 1464 WP_001194206.1 polynucleotide adenylyltransferase PcnB -
  ABUS39_RS15655 comEA 3235144..3235554 (-) 411 WP_025466948.1 ComEA family DNA-binding protein Machinery gene
  ABUS39_RS15660 mazG 3235523..3236329 (-) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS39_RS15665 - 3236441..3237214 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  ABUS39_RS15670 - 3237259..3239565 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15733.02 Da        Isoelectric Point: 10.3828

>NTDB_id=1053776 ABUS39_RS15655 WP_025466948.1 3235144..3235554(-) (comEA) [Acinetobacter baumannii strain Rp772]
MQYSMRFWKNKYFILIMLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDFTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053776 ABUS39_RS15655 WP_025466948.1 3235144..3235554(-) (comEA) [Acinetobacter baumannii strain Rp772]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTATTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCAGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTTTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

43.511

96.324

0.419

Multiple sequence alignment