Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS33_RS02860 Genome accession   NZ_CP169842
Coordinates   605868..606278 (+) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain Rp428     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 600868..611278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS33_RS02845 - 601857..604163 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABUS33_RS02850 - 604208..604981 (-) 774 WP_000682843.1 SDR family oxidoreductase -
  ABUS33_RS02855 mazG 605093..605899 (+) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS33_RS02860 comEA 605868..606278 (+) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  ABUS33_RS02865 pcnB 606403..607866 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABUS33_RS02870 folK 607863..608345 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS33_RS02875 panB 608391..609200 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS33_RS02880 panC 609204..610052 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS33_RS02885 rapZ 610075..610926 (+) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS33_RS02890 - 610923..611192 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=1053622 ABUS33_RS02860 WP_002041921.1 605868..606278(+) (comEA) [Acinetobacter baumannii strain Rp428]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053622 ABUS33_RS02860 WP_002041921.1 605868..606278(+) (comEA) [Acinetobacter baumannii strain Rp428]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382

Multiple sequence alignment