Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS09_RS06260 Genome accession   NZ_CP169839
Coordinates   1206074..1206484 (-) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain Rp426     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1201074..1211484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS09_RS06230 - 1201160..1201429 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABUS09_RS06235 rapZ 1201426..1202277 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS09_RS06240 panC 1202300..1203148 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS09_RS06245 panB 1203152..1203961 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS09_RS06250 folK 1204007..1204489 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS09_RS06255 pcnB 1204486..1205949 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABUS09_RS06260 comEA 1206074..1206484 (-) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  ABUS09_RS06265 mazG 1206453..1207259 (-) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS09_RS06270 - 1207371..1208144 (+) 774 WP_000682843.1 SDR family oxidoreductase -
  ABUS09_RS06275 - 1208189..1210495 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=1053565 ABUS09_RS06260 WP_002041921.1 1206074..1206484(-) (comEA) [Acinetobacter baumannii strain Rp426]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053565 ABUS09_RS06260 WP_002041921.1 1206074..1206484(-) (comEA) [Acinetobacter baumannii strain Rp426]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382

Multiple sequence alignment