Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS16_RS05745 Genome accession   NZ_CP169833
Coordinates   1202844..1203254 (+) Length   136 a.a.
NCBI ID   WP_001200131.1    Uniprot ID   A0A0J1A5R4
Organism   Acinetobacter baumannii strain Rp376     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197844..1208254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS16_RS05730 - 1198833..1201139 (+) 2307 WP_157313657.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABUS16_RS05735 - 1201184..1201957 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  ABUS16_RS05740 mazG 1202069..1202875 (+) 807 WP_000359493.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS16_RS05745 comEA 1202844..1203254 (+) 411 WP_001200131.1 ComEA family DNA-binding protein Machinery gene
  ABUS16_RS05750 pcnB 1203379..1204842 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABUS16_RS05755 folK 1204839..1205321 (+) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS16_RS05760 panB 1205367..1206176 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS16_RS05765 panC 1206180..1207028 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS16_RS05770 rapZ 1207051..1207902 (+) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS16_RS05775 - 1207899..1208168 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=1053542 ABUS16_RS05745 WP_001200131.1 1202844..1203254(+) (comEA) [Acinetobacter baumannii strain Rp376]
MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053542 ABUS16_RS05745 WP_001200131.1 1202844..1203254(+) (comEA) [Acinetobacter baumannii strain Rp376]
ATGCAATACAGCATAAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1A5R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment