Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABUS16_RS01440 Genome accession   NZ_CP169833
Coordinates   284785..285603 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Rp376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 279785..290603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS16_RS01425 pilE 280004..280429 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  ABUS16_RS01430 pilY2 280426..280908 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  ABUS16_RS01435 pilY1 280919..284773 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  ABUS16_RS01440 pilX 284785..285603 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS16_RS01445 pilW 285600..286601 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABUS16_RS01450 pilV 286602..287162 (-) 561 WP_157313627.1 type IV pilus modification protein PilV Machinery gene
  ABUS16_RS01455 fimU 287156..287629 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS16_RS01460 ispH 287799..288749 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS16_RS01465 gmk 288872..289501 (+) 630 WP_000015937.1 guanylate kinase -
  ABUS16_RS01470 rpoZ 289574..289852 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS16_RS01475 - 289891..290021 (+) 131 Protein_279 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1053516 ABUS16_RS01440 WP_000149374.1 284785..285603(-) (pilX) [Acinetobacter baumannii strain Rp376]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1053516 ABUS16_RS01440 WP_000149374.1 284785..285603(-) (pilX) [Acinetobacter baumannii strain Rp376]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment