Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABUS16_RS01455 Genome accession   NZ_CP169833
Coordinates   287156..287629 (-) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain Rp376     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 282156..292629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS16_RS01440 pilX 284785..285603 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS16_RS01445 pilW 285600..286601 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABUS16_RS01450 pilV 286602..287162 (-) 561 WP_157313627.1 type IV pilus modification protein PilV Machinery gene
  ABUS16_RS01455 fimU 287156..287629 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS16_RS01460 ispH 287799..288749 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS16_RS01465 gmk 288872..289501 (+) 630 WP_000015937.1 guanylate kinase -
  ABUS16_RS01470 rpoZ 289574..289852 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS16_RS01475 - 289891..290021 (+) 131 Protein_279 hypothetical protein -
  ABUS16_RS01480 - 290061..292166 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=1053519 ABUS16_RS01455 WP_001214060.1 287156..287629(-) (fimU) [Acinetobacter baumannii strain Rp376]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1053519 ABUS16_RS01455 WP_001214060.1 287156..287629(-) (fimU) [Acinetobacter baumannii strain Rp376]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment