Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS13_RS15400 Genome accession   NZ_CP169832
Coordinates   3212393..3212803 (-) Length   136 a.a.
NCBI ID   WP_001200131.1    Uniprot ID   A0A0J1A5R4
Organism   Acinetobacter baumannii strain Lv648     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3207393..3217803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS13_RS15370 - 3207479..3207748 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABUS13_RS15375 rapZ 3207745..3208596 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS13_RS15380 panC 3208619..3209467 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS13_RS15385 panB 3209471..3210280 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS13_RS15390 folK 3210326..3210808 (-) 483 WP_000219223.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS13_RS15395 pcnB 3210805..3212268 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABUS13_RS15400 comEA 3212393..3212803 (-) 411 WP_001200131.1 ComEA family DNA-binding protein Machinery gene
  ABUS13_RS15405 mazG 3212772..3213578 (-) 807 WP_000359493.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS13_RS15410 - 3213690..3214463 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  ABUS13_RS15415 - 3214508..3216814 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15650.89 Da        Isoelectric Point: 10.3828

>NTDB_id=1053493 ABUS13_RS15400 WP_001200131.1 3212393..3212803(-) (comEA) [Acinetobacter baumannii strain Lv648]
MQYSIRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053493 ABUS13_RS15400 WP_001200131.1 3212393..3212803(-) (comEA) [Acinetobacter baumannii strain Lv648]
ATGCAATACAGCATAAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J1A5R4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment