Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   R8922_RS08130 Genome accession   NZ_AP028390
Coordinates   1573803..1575215 (-) Length   470 a.a.
NCBI ID   WP_100612060.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11411     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568803..1580215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8922_RS08105 (B11411_16300) - 1569127..1569891 (+) 765 WP_004306514.1 TSUP family transporter -
  R8922_RS08110 (B11411_16310) ctsF 1569884..1571065 (-) 1182 WP_052773662.1 type II secretion system F family protein Machinery gene
  R8922_RS08115 (B11411_16320) ctsE 1571062..1572621 (-) 1560 WP_107702019.1 GspE/PulE family protein Machinery gene
  R8922_RS08120 (B11411_16330) ctsX 1572611..1573198 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  R8922_RS08125 (B11411_16340) ctsP 1573202..1573810 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  R8922_RS08130 (B11411_16350) ctsD 1573803..1575215 (-) 1413 WP_100612060.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8922_RS08135 (B11411_16360) ctsR 1575193..1575504 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R8922_RS08140 (B11411_16370) nifJ 1575528..1579088 (-) 3561 WP_070265384.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8922_RS08145 (B11411_16380) - 1579181..1579822 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53091.56 Da        Isoelectric Point: 6.1926

>NTDB_id=105346 R8922_RS08130 WP_100612060.1 1573803..1575215(-) (ctsD) [Campylobacter jejuni strain BCH-11411]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIEESLDEFAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGIDTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=105346 R8922_RS08130 WP_100612060.1 1573803..1575215(-) (ctsD) [Campylobacter jejuni strain BCH-11411]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATAGAAGAAAGTCTTGATGAGTTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAATTCTGTCAATATTCATCAAATGAGTTTAGATGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGTATTGATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATTGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAAAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

98.936

100

0.989

Multiple sequence alignment