Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8922_RS08110 Genome accession   NZ_AP028390
Coordinates   1569884..1571065 (-) Length   393 a.a.
NCBI ID   WP_052773662.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11411     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564884..1576065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8922_RS08080 (B11411_16250) - 1565431..1565772 (+) 342 WP_002868232.1 hypothetical protein -
  R8922_RS08085 (B11411_16260) flgM 1565835..1566032 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8922_RS08090 (B11411_16270) - 1566074..1566508 (+) 435 WP_002856482.1 flagellar protein FlgN -
  R8922_RS08095 (B11411_16280) flgK 1566518..1568344 (+) 1827 WP_002856644.1 flagellar hook-associated protein FlgK -
  R8922_RS08100 (B11411_16290) - 1568361..1569123 (+) 763 Protein_1579 TIGR02757 family protein -
  R8922_RS08105 (B11411_16300) - 1569127..1569891 (+) 765 WP_004306514.1 TSUP family transporter -
  R8922_RS08110 (B11411_16310) ctsF 1569884..1571065 (-) 1182 WP_052773662.1 type II secretion system F family protein Machinery gene
  R8922_RS08115 (B11411_16320) ctsE 1571062..1572621 (-) 1560 WP_107702019.1 GspE/PulE family protein Machinery gene
  R8922_RS08120 (B11411_16330) ctsX 1572611..1573198 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  R8922_RS08125 (B11411_16340) ctsP 1573202..1573810 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  R8922_RS08130 (B11411_16350) ctsD 1573803..1575215 (-) 1413 WP_100612060.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8922_RS08135 (B11411_16360) ctsR 1575193..1575504 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45746.38 Da        Isoelectric Point: 9.2580

>NTDB_id=105342 R8922_RS08110 WP_052773662.1 1569884..1571065(-) (ctsF) [Campylobacter jejuni strain BCH-11411]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDSYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105342 R8922_RS08110 WP_052773662.1 1569884..1571065(-) (ctsF) [Campylobacter jejuni strain BCH-11411]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATAGCTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCACTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGATCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.959

99.746

0.977

Multiple sequence alignment