Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8922_RS08135 Genome accession   NZ_AP028390
Coordinates   1575193..1575504 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11411     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570193..1580504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8922_RS08115 (B11411_16320) ctsE 1571062..1572621 (-) 1560 WP_107702019.1 GspE/PulE family protein Machinery gene
  R8922_RS08120 (B11411_16330) ctsX 1572611..1573198 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  R8922_RS08125 (B11411_16340) ctsP 1573202..1573810 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  R8922_RS08130 (B11411_16350) ctsD 1573803..1575215 (-) 1413 WP_100612060.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8922_RS08135 (B11411_16360) ctsR 1575193..1575504 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R8922_RS08140 (B11411_16370) nifJ 1575528..1579088 (-) 3561 WP_070265384.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8922_RS08145 (B11411_16380) - 1579181..1579822 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=105347 R8922_RS08135 WP_002862131.1 1575193..1575504(-) (ctsR) [Campylobacter jejuni strain BCH-11411]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105347 R8922_RS08135 WP_002862131.1 1575193..1575504(-) (ctsR) [Campylobacter jejuni strain BCH-11411]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment