Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   ACFZP9_RS10090 Genome accession   NZ_OZ186791
Coordinates   2279117..2281261 (-) Length   714 a.a.
NCBI ID   WP_137960841.1    Uniprot ID   A0ABY6BR25
Organism   Streptomyces sp. SudanB135_2055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2274117..2286261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFZP9_RS10075 (SUDANB135_02005) - 2274987..2275988 (-) 1002 WP_046250553.1 TerC family protein -
  ACFZP9_RS10080 (SUDANB135_02006) - 2276247..2278259 (-) 2013 WP_385628358.1 TerD family protein -
  ACFZP9_RS10085 (SUDANB135_02007) - 2278397..2278975 (-) 579 WP_019328123.1 TerD family protein -
  ACFZP9_RS10090 (SUDANB135_02008) uvrB 2279117..2281261 (-) 2145 WP_137960841.1 excinuclease ABC subunit UvrB Machinery gene
  ACFZP9_RS10095 (SUDANB135_02009) - 2281302..2282180 (-) 879 WP_019328121.1 MHYT domain-containing protein -
  ACFZP9_RS10100 (SUDANB135_02010) - 2282470..2283402 (+) 933 WP_050990757.1 glycerophosphodiester phosphodiesterase family protein -
  ACFZP9_RS10105 (SUDANB135_02011) - 2283436..2283990 (+) 555 WP_031017139.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  ACFZP9_RS10110 (SUDANB135_02012) - 2284038..2284466 (-) 429 WP_030972132.1 VOC family protein -
  ACFZP9_RS10115 (SUDANB135_02013) - 2284585..2285493 (+) 909 WP_030972131.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80204.74 Da        Isoelectric Point: 4.7929

>NTDB_id=1053458 ACFZP9_RS10090 WP_137960841.1 2279117..2281261(-) (uvrB) [Streptomyces sp. SudanB135_2055]
MRPVSQIERTVAPFEVVSPYQPSGDQPAAIAELARRIEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEEHDRDELLRRFVDIQYTRNDMAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPVTG
EIISDDQQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGRSPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGAYELSRSDGAVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQIAYNQANGIDPQPLRKKINDIVAQIAREDIDTEQLLGSGYRQSKDGKAAKAPVPSLGG
QATADGKAAKGRRKAKETAVTDRPAAELAAQIEDLTTRMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=1053458 ACFZP9_RS10090 WP_137960841.1 2279117..2281261(-) (uvrB) [Streptomyces sp. SudanB135_2055]
ATGCGGCCCGTTTCCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
GGCGGCCATCGCCGAGCTGGCCCGGCGCATCGAAGCAGGCGAGAAGGACGTCGTCCTGCTCGGCGCCACCGGCACCGGCA
AGTCAGCCACCACCGCGTGGATGATCGAGAAACTCCAGCGCCCCACCCTGGTCATGGCCCCCAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAGTTCCGCGAACTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGCCACT
CGGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACCCCG
CAGGAGTACGTGGACCGGATGGTCCCCCTCCGGGTCGGCGAGGAGCACGACCGGGACGAGCTGCTGCGCCGCTTCGTGGA
CATCCAGTACACGCGCAACGACATGGCCTTCACCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACCCTCCACCCGGTCACCGGC
GAGATCATCAGCGACGACCAGCAGCTGTACGTCTTCCCGGCCTCGCACTACGTCGCGGGACCCGAGCGCCTGGAGCGGGC
CGTCAACGACATCGAGAAGGAGCTGGCCGAGCGCCTGACCGAGCTGGAGAAGCAGGGCAAGCTGCTCGAGGCACAGCGGC
TGCGGATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCTCGCCCGGCTCCCCGCCCAACACCCTGCTCGACTACTTCCCGGACGACTTCTTGCTCGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGTGACGCCTCCCGCAAGCGGACCCTGGTCGACCACGGCT
TCCGGCTCCCTTCCGCCCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAACGCATCGGGCAGACCGTGTACCTG
TCGGCCACCCCGGGCGCCTACGAGCTGTCCCGTTCGGACGGCGCGGTCGAGCAGATCATCCGCCCCACGGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTCCACGAGATCCGCACGCGGACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTGGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACCCTGCGCCGCGTGGAGCTGCTGCGGGAGCTGCGCGCCGGTGAGTACGACGTCCT
GGTCGGCATCAACCTGCTCAGGGAGGGCCTCGACCTGCCGGAGGTCTCCCTGGTGGCGATCCTGGACGCCGACAAGGAGG
GCTTCCTGCGCTCGGGCACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGCCAGGTCCACATGTAC
GCCGACAAGATCACGCCGGCGATGGAGAAGGCGATCGACGAGACCAACCGCCGCCGCGAGAAGCAGATCGCGTACAACCA
GGCCAACGGCATCGACCCGCAGCCCCTCCGCAAGAAGATCAACGACATCGTCGCCCAGATCGCCCGCGAGGACATCGACA
CCGAGCAGCTACTCGGCTCGGGCTACCGCCAGTCCAAGGACGGCAAGGCCGCCAAGGCTCCCGTGCCCTCCCTGGGCGGC
CAGGCGACAGCCGACGGCAAGGCGGCCAAGGGCAGGCGGAAGGCCAAGGAGACGGCGGTCACCGACCGTCCGGCGGCGGA
GCTGGCCGCGCAGATCGAGGACCTGACCACCCGTATGCGGGCCGCCGCCGCGGACCTCCAGTTCGAGATCGCGGCCCGGC
TGCGCGACGAGGTCTCCGAGATGAAGAAGGAGCTGCGCCAGATGAAGGAGGCCGGTCTGGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB/uvrC motif (UVR)

(671-703)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.812

96.639

0.549
  uvrB Streptococcus pneumoniae R6

56.812

96.639

0.549
  uvrB Streptococcus pneumoniae D39

56.812

96.639

0.549

Multiple sequence alignment