Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABUS35_RS17335 Genome accession   NZ_CP169828
Coordinates   3601720..3602247 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain Lv647     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3596720..3607247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS35_RS17315 - 3596904..3597779 (-) 876 WP_000218802.1 hypothetical protein -
  ABUS35_RS17320 aroB 3597795..3598877 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ABUS35_RS17325 aroK 3598906..3599475 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABUS35_RS17330 pilQ 3599487..3601652 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABUS35_RS17335 pilP 3601720..3602247 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABUS35_RS17340 pilO 3602258..3602998 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS35_RS17345 pilN 3602995..3603636 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ABUS35_RS17350 pilM 3603636..3604694 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=1053458 ABUS35_RS17335 WP_000695065.1 3601720..3602247(-) (pilP) [Acinetobacter baumannii strain Lv647]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1053458 ABUS35_RS17335 WP_000695065.1 3601720..3602247(-) (pilP) [Acinetobacter baumannii strain Lv647]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714

Multiple sequence alignment