Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS42_RS06020 Genome accession   NZ_CP169819
Coordinates   1247320..1247730 (-) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain Lv419     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242320..1252730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS42_RS05990 - 1242406..1242675 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABUS42_RS05995 rapZ 1242672..1243523 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS42_RS06000 panC 1243546..1244394 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS42_RS06005 panB 1244398..1245207 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS42_RS06010 folK 1245253..1245735 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS42_RS06015 pcnB 1245732..1247195 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABUS42_RS06020 comEA 1247320..1247730 (-) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  ABUS42_RS06025 mazG 1247699..1248505 (-) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS42_RS06030 - 1248617..1249390 (+) 774 WP_000682843.1 SDR family oxidoreductase -
  ABUS42_RS06035 - 1249435..1251741 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=1053375 ABUS42_RS06020 WP_002041921.1 1247320..1247730(-) (comEA) [Acinetobacter baumannii strain Lv419]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053375 ABUS42_RS06020 WP_002041921.1 1247320..1247730(-) (comEA) [Acinetobacter baumannii strain Lv419]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382

Multiple sequence alignment