Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS27_RS14835 Genome accession   NZ_CP169811
Coordinates   3113418..3113828 (-) Length   136 a.a.
NCBI ID   WP_005112082.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Lv371     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3108418..3118828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS27_RS14805 - 3108504..3108773 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABUS27_RS14810 rapZ 3108770..3109621 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS27_RS14815 panC 3109644..3110492 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS27_RS14820 panB 3110496..3111305 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS27_RS14825 folK 3111351..3111833 (-) 483 WP_000219219.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS27_RS14830 pcnB 3111830..3113293 (-) 1464 WP_001194203.1 polynucleotide adenylyltransferase PcnB -
  ABUS27_RS14835 comEA 3113418..3113828 (-) 411 WP_005112082.1 ComEA family DNA-binding protein Machinery gene
  ABUS27_RS14840 mazG 3113797..3114603 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS27_RS14845 - 3114715..3115488 (+) 774 WP_000682844.1 SDR family oxidoreductase -
  ABUS27_RS14850 - 3115533..3117839 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.94 Da        Isoelectric Point: 10.4475

>NTDB_id=1053349 ABUS27_RS14835 WP_005112082.1 3113418..3113828(-) (comEA) [Acinetobacter baumannii strain Lv371]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053349 ABUS27_RS14835 WP_005112082.1 3113418..3113828(-) (comEA) [Acinetobacter baumannii strain Lv371]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment