Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS37_RS15985 Genome accession   NZ_CP169809
Coordinates   3355742..3356152 (-) Length   136 a.a.
NCBI ID   WP_001200146.1    Uniprot ID   A0AAQ0VHX0
Organism   Acinetobacter baumannii strain Lv347     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3350742..3361152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS37_RS15955 - 3350828..3351097 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABUS37_RS15960 rapZ 3351094..3351945 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS37_RS15965 panC 3351968..3352816 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS37_RS15970 panB 3352820..3353629 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS37_RS15975 folK 3353675..3354157 (-) 483 WP_000219221.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS37_RS15980 pcnB 3354154..3355617 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABUS37_RS15985 comEA 3355742..3356152 (-) 411 WP_001200146.1 helix-hairpin-helix domain-containing protein Machinery gene
  ABUS37_RS15990 mazG 3356121..3356927 (-) 807 WP_000359485.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS37_RS15995 - 3357039..3357812 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  ABUS37_RS16000 - 3357857..3360163 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15715.03 Da        Isoelectric Point: 10.4475

>NTDB_id=1053302 ABUS37_RS15985 WP_001200146.1 3355742..3356152(-) (comEA) [Acinetobacter baumannii strain Lv347]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053302 ABUS37_RS15985 WP_001200146.1 3355742..3356152(-) (comEA) [Acinetobacter baumannii strain Lv347]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

95.588

100

0.956
  comEA Acinetobacter baumannii strain A118

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412

Multiple sequence alignment