Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABUS32_RS17260 Genome accession   NZ_CP169805
Coordinates   3577693..3578553 (+) Length   286 a.a.
NCBI ID   WP_001152269.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HvAb04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3572693..3583553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS32_RS17240 secG 3573298..3573627 (-) 330 WP_000555570.1 preprotein translocase subunit SecG -
  ABUS32_RS17245 tpiA 3573640..3574434 (-) 795 WP_000016939.1 triose-phosphate isomerase -
  ABUS32_RS17250 pilB 3574725..3576437 (+) 1713 WP_001274989.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABUS32_RS17255 pilC 3576467..3577693 (+) 1227 WP_000279215.1 type II secretion system F family protein Machinery gene
  ABUS32_RS17260 pilD 3577693..3578553 (+) 861 WP_001152269.1 A24 family peptidase Machinery gene
  ABUS32_RS17265 coaE 3578555..3579151 (+) 597 WP_000874124.1 dephospho-CoA kinase -
  ABUS32_RS17270 - 3579148..3580062 (-) 915 WP_000075015.1 DMT family transporter -
  ABUS32_RS17275 rlmB 3580097..3580846 (-) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABUS32_RS17280 - 3580948..3581274 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  ABUS32_RS17285 - 3581351..3582661 (-) 1311 WP_000753286.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32029.45 Da        Isoelectric Point: 6.6663

>NTDB_id=1053263 ABUS32_RS17260 WP_001152269.1 3577693..3578553(+) (pilD) [Acinetobacter baumannii strain HvAb04]
MQDIIAYFIQNLTALYIAVALMSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IPWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=1053263 ABUS32_RS17260 WP_001152269.1 3577693..3578553(+) (pilD) [Acinetobacter baumannii strain HvAb04]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCATGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCCTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

98.601

100

0.986
  pilD Acinetobacter nosocomialis M2

98.252

100

0.983
  pilD Vibrio cholerae strain A1552

53.676

95.105

0.51
  pilD Vibrio campbellii strain DS40M4

52.399

94.755

0.497
  pilD Neisseria gonorrhoeae MS11

47.348

92.308

0.437

Multiple sequence alignment