Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS32_RS15970 Genome accession   NZ_CP169805
Coordinates   3301489..3301899 (-) Length   136 a.a.
NCBI ID   WP_002036702.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HvAb04     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3296489..3306899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS32_RS15940 - 3296575..3296844 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABUS32_RS15945 rapZ 3296841..3297692 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS32_RS15950 panC 3297715..3298563 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS32_RS15955 panB 3298567..3299376 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS32_RS15960 folK 3299422..3299904 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS32_RS15965 pcnB 3299901..3301364 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ABUS32_RS15970 comEA 3301489..3301899 (-) 411 WP_002036702.1 ComEA family DNA-binding protein Machinery gene
  ABUS32_RS15975 mazG 3301868..3302674 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS32_RS15980 - 3302786..3303559 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  ABUS32_RS15985 - 3303604..3305910 (-) 2307 WP_034129556.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15711.00 Da        Isoelectric Point: 10.3828

>NTDB_id=1053255 ABUS32_RS15970 WP_002036702.1 3301489..3301899(-) (comEA) [Acinetobacter baumannii strain HvAb04]
MQYSMRFWKNKYFVLIILCLGVISPSIYAQSFDQNFQEWKVKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053255 ABUS32_RS15970 WP_002036702.1 3301489..3301899(-) (comEA) [Acinetobacter baumannii strain HvAb04]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGAT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGTTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

45.946

81.618

0.375

Multiple sequence alignment