Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS34_RS02890 Genome accession   NZ_CP169801
Coordinates   626421..626831 (+) Length   136 a.a.
NCBI ID   WP_031959727.1    Uniprot ID   A0AAD2YQC0
Organism   Acinetobacter baumannii strain Hv782     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 621421..631831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS34_RS02875 - 622410..624716 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABUS34_RS02880 - 624761..625534 (-) 774 WP_024433150.1 SDR family oxidoreductase -
  ABUS34_RS02885 mazG 625646..626452 (+) 807 WP_031959726.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS34_RS02890 comEA 626421..626831 (+) 411 WP_031959727.1 ComEA family DNA-binding protein Machinery gene
  ABUS34_RS02895 pcnB 626956..628419 (+) 1464 WP_031959729.1 polynucleotide adenylyltransferase PcnB -
  ABUS34_RS02900 folK 628416..628898 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS34_RS02905 panB 628944..629753 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS34_RS02910 panC 629757..630605 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS34_RS02915 rapZ 630628..631479 (+) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS34_RS02920 - 631476..631745 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15761.12 Da        Isoelectric Point: 10.4475

>NTDB_id=1053201 ABUS34_RS02890 WP_031959727.1 626421..626831(+) (comEA) [Acinetobacter baumannii strain Hv782]
MQYSMRFWKNKYFLLIMLCLGVISPSIYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053201 ABUS34_RS02890 WP_031959727.1 626421..626831(+) (comEA) [Acinetobacter baumannii strain Hv782]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGAT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baumannii D1279779

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412

Multiple sequence alignment