Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACI1L5_RS00630 Genome accession   NZ_OZ121091
Coordinates   120232..120708 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli isolate 366_BP0076     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 115232..125708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI1L5_RS00580 (KHEC_DIPIPN_00605) sbmC 115725..116198 (+) 474 WP_001105416.1 DNA gyrase inhibitor SbmC -
  ACI1L5_RS00585 (KHEC_DIPIPN_00610) yeeA 116396..117454 (+) 1059 WP_001200890.1 FUSC family protein -
  ACI1L5_RS00590 (KHEC_DIPIPN_00620) tmaR 117626..117955 (+) 330 WP_000450409.1 DUF496 family protein -
  ACI1L5_RS00595 - 118056..118238 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  ACI1L5_RS00600 - 118301..118438 (+) 138 Protein_119 transposase domain-containing protein -
  ACI1L5_RS00605 - 118727..118819 (-) 93 Protein_120 DUF957 domain-containing protein -
  ACI1L5_RS00610 (KHEC_DIPIPN_00625) yeeW 118853..119047 (-) 195 WP_000988600.1 DUF5983 family protein -
  ACI1L5_RS00615 (KHEC_DIPIPN_00630) cbtA 119044..119417 (-) 374 Protein_122 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  ACI1L5_RS00620 (KHEC_DIPIPN_00635) cbeA 119506..119874 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  ACI1L5_RS00625 (KHEC_DIPIPN_00640) yeeT 119948..120169 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  ACI1L5_RS00630 (KHEC_DIPIPN_00645) radC 120232..120708 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  ACI1L5_RS00635 (KHEC_DIPIPN_00650) - 120724..121203 (-) 480 WP_001703514.1 antirestriction protein -
  ACI1L5_RS00640 (KHEC_DIPIPN_00655) - 121285..122106 (-) 822 WP_021523139.1 DUF932 domain-containing protein -
  ACI1L5_RS00645 (KHEC_DIPIPN_00660) - 122327..122737 (-) 411 WP_000846713.1 hypothetical protein -
  ACI1L5_RS00650 (KHEC_DIPIPN_00665) - 122753..123436 (-) 684 WP_000775500.1 hypothetical protein -
  ACI1L5_RS00655 (KHEC_DIPIPN_00670) - 123572..124642 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  ACI1L5_RS00660 (KHEC_DIPIPN_00675) - 124639..125544 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=1053201 ACI1L5_RS00630 WP_001186773.1 120232..120708(-) (radC) [Escherichia coli isolate 366_BP0076]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1053201 ACI1L5_RS00630 WP_001186773.1 120232..120708(-) (radC) [Escherichia coli isolate 366_BP0076]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment