Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABUS26_RS15865 Genome accession   NZ_CP169795
Coordinates   3289527..3289937 (-) Length   136 a.a.
NCBI ID   WP_031959727.1    Uniprot ID   A0AAD2YQC0
Organism   Acinetobacter baumannii strain Hv780     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3284527..3294937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS26_RS15835 - 3284613..3284882 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ABUS26_RS15840 rapZ 3284879..3285730 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ABUS26_RS15845 panC 3285753..3286601 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ABUS26_RS15850 panB 3286605..3287414 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ABUS26_RS15855 folK 3287460..3287942 (-) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ABUS26_RS15860 pcnB 3287939..3289402 (-) 1464 WP_031959729.1 polynucleotide adenylyltransferase PcnB -
  ABUS26_RS15865 comEA 3289527..3289937 (-) 411 WP_031959727.1 ComEA family DNA-binding protein Machinery gene
  ABUS26_RS15870 mazG 3289906..3290712 (-) 807 WP_031959726.1 nucleoside triphosphate pyrophosphohydrolase -
  ABUS26_RS15875 - 3290824..3291597 (+) 774 WP_024433150.1 SDR family oxidoreductase -
  ABUS26_RS15880 - 3291642..3293948 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15761.12 Da        Isoelectric Point: 10.4475

>NTDB_id=1053125 ABUS26_RS15865 WP_031959727.1 3289527..3289937(-) (comEA) [Acinetobacter baumannii strain Hv780]
MQYSMRFWKNKYFLLIMLCLGVISPSIYAQSFDKNFQEWKAKQQMYDQKLNISKFSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1053125 ABUS26_RS15865 WP_031959727.1 3289527..3289937(-) (comEA) [Acinetobacter baumannii strain Hv780]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGGGTAATTTCACCTTCGAT
TTACGCTCAATCTTTTGACAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTTTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baumannii D1279779

94.853

100

0.949
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412

Multiple sequence alignment