Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABUS40_RS17220 Genome accession   NZ_CP169788
Coordinates   3605284..3606024 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain Hv766     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3600284..3611024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS40_RS17200 aroB 3600826..3601908 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ABUS40_RS17205 aroK 3601937..3602506 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABUS40_RS17210 pilQ 3602518..3604683 (-) 2166 WP_368566537.1 type IV pilus secretin PilQ Machinery gene
  ABUS40_RS17215 pilP 3604746..3605273 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  ABUS40_RS17220 pilO 3605284..3606024 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS40_RS17225 pilN 3606021..3606662 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  ABUS40_RS17230 pilM 3606662..3607720 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABUS40_RS17235 ponA 3607882..3610437 (+) 2556 WP_000736663.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=1053051 ABUS40_RS17220 WP_000076101.1 3605284..3606024(-) (pilO) [Acinetobacter baumannii strain Hv766]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1053051 ABUS40_RS17220 WP_000076101.1 3605284..3606024(-) (pilO) [Acinetobacter baumannii strain Hv766]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCAAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGAGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAGGATAACAAGTCTGATATTCCTGTACTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment