Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   ABUS40_RS17215 Genome accession   NZ_CP169788
Coordinates   3604746..3605273 (-) Length   175 a.a.
NCBI ID   WP_000695059.1    Uniprot ID   A0A0D5YDP9
Organism   Acinetobacter baumannii strain Hv766     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3599746..3610273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS40_RS17195 - 3599935..3600810 (-) 876 WP_000218810.1 hypothetical protein -
  ABUS40_RS17200 aroB 3600826..3601908 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  ABUS40_RS17205 aroK 3601937..3602506 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABUS40_RS17210 pilQ 3602518..3604683 (-) 2166 WP_368566537.1 type IV pilus secretin PilQ Machinery gene
  ABUS40_RS17215 pilP 3604746..3605273 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  ABUS40_RS17220 pilO 3605284..3606024 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS40_RS17225 pilN 3606021..3606662 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  ABUS40_RS17230 pilM 3606662..3607720 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.59 Da        Isoelectric Point: 9.0270

>NTDB_id=1053050 ABUS40_RS17215 WP_000695059.1 3604746..3605273(-) (pilP) [Acinetobacter baumannii strain Hv766]
MKIKQITLCVLASVVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1053050 ABUS40_RS17215 WP_000695059.1 3604746..3605273(-) (pilP) [Acinetobacter baumannii strain Hv766]
ATGAAAATTAAGCAAATTACTCTTTGTGTTTTGGCGAGTGTTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YDP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.286

100

0.983
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714

Multiple sequence alignment