Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABUS40_RS17095 Genome accession   NZ_CP169788
Coordinates   3578334..3579152 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Hv766     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3573334..3584152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS40_RS17080 pilE 3573553..3573978 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  ABUS40_RS17085 pilY2 3573975..3574457 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  ABUS40_RS17090 pilY1 3574468..3578322 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  ABUS40_RS17095 pilX 3578334..3579152 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS40_RS17100 pilW 3579149..3580150 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABUS40_RS17105 pilV 3580151..3580711 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABUS40_RS17110 fimU 3580705..3581178 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS40_RS17115 ispH 3581348..3582298 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS40_RS17120 gmk 3582421..3583050 (+) 630 WP_000015937.1 guanylate kinase -
  ABUS40_RS17125 rpoZ 3583123..3583401 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS40_RS17130 - 3583440..3583570 (+) 131 Protein_3343 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1053045 ABUS40_RS17095 WP_000149374.1 3578334..3579152(-) (pilX) [Acinetobacter baumannii strain Hv766]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1053045 ABUS40_RS17095 WP_000149374.1 3578334..3579152(-) (pilX) [Acinetobacter baumannii strain Hv766]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment