Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABUS40_RS17110 Genome accession   NZ_CP169788
Coordinates   3580705..3581178 (-) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain Hv766     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3575705..3586178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS40_RS17095 pilX 3578334..3579152 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS40_RS17100 pilW 3579149..3580150 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  ABUS40_RS17105 pilV 3580151..3580711 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABUS40_RS17110 fimU 3580705..3581178 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS40_RS17115 ispH 3581348..3582298 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS40_RS17120 gmk 3582421..3583050 (+) 630 WP_000015937.1 guanylate kinase -
  ABUS40_RS17125 rpoZ 3583123..3583401 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS40_RS17130 - 3583440..3583570 (+) 131 Protein_3343 hypothetical protein -
  ABUS40_RS17135 - 3583610..3585715 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=1053048 ABUS40_RS17110 WP_001214060.1 3580705..3581178(-) (fimU) [Acinetobacter baumannii strain Hv766]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1053048 ABUS40_RS17110 WP_001214060.1 3580705..3581178(-) (fimU) [Acinetobacter baumannii strain Hv766]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987

Multiple sequence alignment