Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   R8631_RS08015 Genome accession   NZ_AP028387
Coordinates   1550040..1551452 (-) Length   470 a.a.
NCBI ID   WP_100612060.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11353     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1545040..1556452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8631_RS07990 (B11353_16180) - 1545364..1546128 (+) 765 WP_002855301.1 TSUP family transporter -
  R8631_RS07995 (B11353_16190) ctsF 1546121..1547302 (-) 1182 WP_070265382.1 type II secretion system F family protein Machinery gene
  R8631_RS08000 (B11353_16200) ctsE 1547299..1548858 (-) 1560 WP_070265383.1 GspE/PulE family protein Machinery gene
  R8631_RS08005 (B11353_16210) ctsX 1548848..1549435 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  R8631_RS08010 (B11353_16220) ctsP 1549439..1550047 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  R8631_RS08015 (B11353_16230) ctsD 1550040..1551452 (-) 1413 WP_100612060.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8631_RS08020 (B11353_16240) ctsR 1551430..1551741 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R8631_RS08025 (B11353_16250) nifJ 1551765..1555325 (-) 3561 WP_070265384.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8631_RS08030 (B11353_16260) - 1555418..1556059 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53091.56 Da        Isoelectric Point: 6.1926

>NTDB_id=105292 R8631_RS08015 WP_100612060.1 1550040..1551452(-) (ctsD) [Campylobacter jejuni strain BCH-11353]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIEESLDEFAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGIDTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=105292 R8631_RS08015 WP_100612060.1 1550040..1551452(-) (ctsD) [Campylobacter jejuni strain BCH-11353]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATAGAAGAAAGTCTTGATGAGTTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAATTCTGTCAATATTCATCAAATGAGTTTAGATGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGTATTGATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGATGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATTGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGCGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

98.936

100

0.989

Multiple sequence alignment