Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8631_RS07995 Genome accession   NZ_AP028387
Coordinates   1546121..1547302 (-) Length   393 a.a.
NCBI ID   WP_070265382.1    Uniprot ID   A0A5Z1WD11
Organism   Campylobacter jejuni strain BCH-11353     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1541121..1552302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8631_RS07965 (B11353_16130) - 1541668..1542009 (+) 342 WP_002868232.1 hypothetical protein -
  R8631_RS07970 (B11353_16140) flgM 1542072..1542269 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8631_RS07975 (B11353_16150) - 1542311..1542745 (+) 435 WP_002856482.1 flagellar protein FlgN -
  R8631_RS07980 (B11353_16160) flgK 1542755..1544581 (+) 1827 WP_004306510.1 flagellar hook-associated protein FlgK -
  R8631_RS07985 (B11353_16170) - 1544598..1545360 (+) 763 Protein_1552 TIGR02757 family protein -
  R8631_RS07990 (B11353_16180) - 1545364..1546128 (+) 765 WP_002855301.1 TSUP family transporter -
  R8631_RS07995 (B11353_16190) ctsF 1546121..1547302 (-) 1182 WP_070265382.1 type II secretion system F family protein Machinery gene
  R8631_RS08000 (B11353_16200) ctsE 1547299..1548858 (-) 1560 WP_070265383.1 GspE/PulE family protein Machinery gene
  R8631_RS08005 (B11353_16210) ctsX 1548848..1549435 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  R8631_RS08010 (B11353_16220) ctsP 1549439..1550047 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  R8631_RS08015 (B11353_16230) ctsD 1550040..1551452 (-) 1413 WP_100612060.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8631_RS08020 (B11353_16240) ctsR 1551430..1551741 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45800.47 Da        Isoelectric Point: 9.0938

>NTDB_id=105288 R8631_RS07995 WP_070265382.1 1546121..1547302(-) (ctsF) [Campylobacter jejuni strain BCH-11353]
MKFYEVEFLKNNQNYTKTIKAENLNIAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGINFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105288 R8631_RS07995 WP_070265382.1 1546121..1547302(-) (ctsF) [Campylobacter jejuni strain BCH-11353]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGCGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGCGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCACTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGATCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Z1WD11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.214

99.746

0.98

Multiple sequence alignment