Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8631_RS08020 Genome accession   NZ_AP028387
Coordinates   1551430..1551741 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11353     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1546430..1556741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8631_RS08000 (B11353_16200) ctsE 1547299..1548858 (-) 1560 WP_070265383.1 GspE/PulE family protein Machinery gene
  R8631_RS08005 (B11353_16210) ctsX 1548848..1549435 (-) 588 WP_004306520.1 hypothetical protein Machinery gene
  R8631_RS08010 (B11353_16220) ctsP 1549439..1550047 (-) 609 WP_004306521.1 ATP-binding protein Machinery gene
  R8631_RS08015 (B11353_16230) ctsD 1550040..1551452 (-) 1413 WP_100612060.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8631_RS08020 (B11353_16240) ctsR 1551430..1551741 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  R8631_RS08025 (B11353_16250) nifJ 1551765..1555325 (-) 3561 WP_070265384.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8631_RS08030 (B11353_16260) - 1555418..1556059 (-) 642 WP_004306528.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=105293 R8631_RS08020 WP_002862131.1 1551430..1551741(-) (ctsR) [Campylobacter jejuni strain BCH-11353]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105293 R8631_RS08020 WP_002862131.1 1551430..1551741(-) (ctsR) [Campylobacter jejuni strain BCH-11353]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment