Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   ACEZDF_RS09640 Genome accession   NZ_CP169539
Coordinates   2125727..2127982 (-) Length   751 a.a.
NCBI ID   WP_054577983.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain BR53     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2120727..2132982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZDF_RS09620 (ACEZDF_09620) kdsB 2122019..2122774 (-) 756 WP_054577981.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACEZDF_RS09625 (ACEZDF_09625) - 2122774..2122953 (-) 180 WP_005378451.1 Trm112 family protein -
  ACEZDF_RS09630 (ACEZDF_09630) lpxK 2122934..2123941 (-) 1008 WP_375058642.1 tetraacyldisaccharide 4'-kinase -
  ACEZDF_RS09635 (ACEZDF_09635) msbA 2123947..2125695 (-) 1749 WP_005387841.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  ACEZDF_RS09640 (ACEZDF_09640) comEC 2125727..2127982 (-) 2256 WP_054577983.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACEZDF_RS09645 (ACEZDF_09645) - 2127991..2128500 (+) 510 WP_005387834.1 DUF2062 domain-containing protein -
  ACEZDF_RS09650 (ACEZDF_09650) lolE 2128649..2129893 (-) 1245 WP_054577984.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  ACEZDF_RS09655 (ACEZDF_09655) lolD 2129896..2130603 (-) 708 WP_005378457.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  ACEZDF_RS09660 (ACEZDF_09660) lolC 2130596..2131804 (-) 1209 WP_017820015.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  ACEZDF_RS09665 (ACEZDF_09665) - 2132054..2132623 (+) 570 WP_017634743.1 hypothetical protein -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84393.26 Da        Isoelectric Point: 7.8865

>NTDB_id=1051946 ACEZDF_RS09640 WP_054577983.1 2125727..2127982(-) (comEC) [Vibrio alginolyticus strain BR53]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFTVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVAIEAVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSISLKPITGLRNEAGFDAEKHAM
GKNIIARAVVNKDAKWIVRSNVSLRQSIIADVADDVSSLHHFSLISALIFADRSWLSEEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGTVRYLLPQYQLLPSLHGLIFAVAYAWLADFSLPTTRAVSVCVVYVLLKYTLVHWTSWRVLLLAVSLQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQRGGWKARLKALLLTQLMLSALIVPVSGHFFSGFSLSSIAYNLVFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWHLVDWSLQPLSTSIQYAVGSWQPISMEMTMLVMVIVVCLIFQRFMSQYAWYLLL
GIVISIKFAAEYEPHWRIDVLDVGHGLAVVVEKDDKVLLYDTGKAWQSGSIAEQVVTPVLHQRGYESIDTLILSHSDNDH
AGGRFFIEDAFSPQRKLSSQFFIEYEPCTRGDQWKWQGLNMEVLWPPALVQRAYNPHSCVLRLTDPISNFSMLFTGDIEA
ISEWILLREPGKLQSDVMLVPHHGSKSSSNPRFIEAVSPSVAVASLAKNNRWGMPAENVVASYRKLGITWLDTGEGGQVS
FFIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=1051946 ACEZDF_RS09640 WP_054577983.1 2125727..2127982(-) (comEC) [Vibrio alginolyticus strain BR53]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATCTCGTCGGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTACGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGTTATGAAGGTATTGTCGCGATAGAAGC
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCATCTCGTTAAAGCCGATTACAGGTCTACGCAACGAAGCTGGCTTTGATGCTGAAAAGCACGCGATG
GGTAAAAATATTATCGCCCGAGCGGTTGTTAACAAAGACGCTAAGTGGATTGTTCGTTCTAATGTATCTCTGCGTCAATC
CATTATTGCCGATGTCGCTGATGATGTGTCTTCCCTTCATCATTTCTCGTTAATAAGTGCGTTAATTTTTGCTGACCGTT
CTTGGTTGTCTGAGGAAGATTGGCAAGCGCTCAGGGACAGTGGTTTACTGCATTTGGTCTCCATTTCTGGTTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTCGTGGGCGGTACCGTTCGTTATCTATTACCCCAATACCAGTTGTTGCCTAGCTT
ACATGGGCTGATCTTCGCTGTTGCCTACGCTTGGTTAGCGGATTTCTCTCTGCCTACTACGCGAGCAGTGTCGGTATGCG
TTGTTTACGTTCTCCTGAAGTATACTCTGGTGCACTGGACTTCTTGGCGAGTTCTTTTGCTTGCAGTATCTCTACAACTG
CTTGTCCAACCTTTTGCATCCTACAGTATGAGCTTTTGGTTATCATACCTCTCCGTTTGTGCGGTATTGTTCGCAATTAA
TTTGATTCGACATCAAAGGGGAGGTTGGAAAGCGCGATTAAAAGCGTTATTGCTTACTCAATTGATGTTGAGCGCTTTAA
TCGTACCTGTTAGTGGCCATTTCTTCTCCGGTTTTAGTTTGTCCTCAATAGCCTACAACTTGGTATTTATTCCTTGGTTC
GGATTTATCGTTGTACCCTTGATGTTTCTAGCCCTGTTCTCATCTTTGTTTCTTGAAATGATAGCGAAGCCTCTGTGGCA
TTTGGTGGACTGGTCATTACAGCCATTGAGCACGTCAATACAGTACGCAGTAGGTTCTTGGCAACCCATTAGCATGGAAA
TGACAATGCTGGTTATGGTGATAGTGGTTTGCTTAATATTTCAACGGTTCATGTCTCAGTACGCGTGGTATTTGTTACTC
GGCATCGTTATTAGTATCAAGTTTGCAGCGGAGTATGAACCGCATTGGCGTATCGATGTATTAGATGTAGGTCATGGCCT
TGCAGTGGTTGTAGAAAAAGACGACAAGGTGTTGCTGTATGACACTGGTAAAGCATGGCAAAGCGGCAGTATCGCAGAGC
AGGTCGTCACTCCGGTTTTGCATCAACGAGGTTATGAAAGCATAGATACACTGATTCTAAGCCATTCCGATAATGATCAC
GCAGGCGGCCGCTTTTTCATTGAAGATGCCTTTTCTCCACAGCGTAAACTTAGTAGTCAATTCTTTATCGAATATGAGCC
TTGCACTAGAGGCGACCAATGGAAATGGCAAGGATTAAACATGGAAGTGCTCTGGCCTCCTGCACTTGTTCAACGTGCGT
ATAATCCGCACTCCTGTGTATTACGACTTACTGACCCTATTTCTAACTTTAGTATGCTTTTTACTGGTGATATTGAGGCC
ATTAGCGAGTGGATTTTGCTTAGAGAACCCGGAAAGTTACAAAGCGATGTGATGCTAGTCCCTCACCACGGGAGTAAAAG
TTCATCGAATCCTCGATTTATTGAGGCGGTGAGCCCGAGTGTGGCAGTTGCTTCTTTAGCAAAAAACAATCGATGGGGAA
TGCCAGCGGAAAATGTCGTTGCTTCATACCGAAAACTTGGCATTACTTGGCTTGATACTGGTGAGGGTGGTCAGGTAAGC
TTCTTTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)

Competence protein (Competence)

(208-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

69.149

100

0.692
  comEC Vibrio campbellii strain DS40M4

65.559

100

0.656
  comEC Vibrio cholerae strain A1552

43.767

100

0.439

Multiple sequence alignment