Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACE1EH_RS16675 Genome accession   NZ_CP169535
Coordinates   3400430..3401119 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain HJ-16     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3395430..3406119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE1EH_RS16640 (ACE1EH_16640) - 3395627..3396109 (-) 483 WP_375004589.1 flagellar protein FlgN -
  ACE1EH_RS16645 (ACE1EH_16645) flgM 3396124..3396390 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACE1EH_RS16650 (ACE1EH_16650) - 3396460..3396879 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ACE1EH_RS16655 (ACE1EH_16655) comFC 3396953..3397642 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  ACE1EH_RS16660 (ACE1EH_16660) - 3397648..3397932 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACE1EH_RS16665 (ACE1EH_16665) comFA 3397990..3399375 (-) 1386 WP_375004591.1 DEAD/DEAH box helicase Machinery gene
  ACE1EH_RS16670 (ACE1EH_16670) - 3399484..3400332 (-) 849 WP_082998319.1 DegV family protein -
  ACE1EH_RS16675 (ACE1EH_16675) degU 3400430..3401119 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACE1EH_RS16680 (ACE1EH_16680) degS 3401196..3402359 (-) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator
  ACE1EH_RS16685 (ACE1EH_16685) - 3402582..3403229 (+) 648 WP_007614107.1 YigZ family protein -
  ACE1EH_RS16690 (ACE1EH_16690) - 3403234..3404454 (+) 1221 WP_375004592.1 LCP family protein -
  ACE1EH_RS16695 (ACE1EH_16695) - 3404553..3405629 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1051897 ACE1EH_RS16675 WP_003219701.1 3400430..3401119(-) (degU) [Bacillus velezensis strain HJ-16]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1051897 ACE1EH_RS16675 WP_003219701.1 3400430..3401119(-) (degU) [Bacillus velezensis strain HJ-16]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment