Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACE1EH_RS16665 Genome accession   NZ_CP169535
Coordinates   3397990..3399375 (-) Length   461 a.a.
NCBI ID   WP_375004591.1    Uniprot ID   -
Organism   Bacillus velezensis strain HJ-16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3392990..3404375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE1EH_RS16630 (ACE1EH_16630) flgL 3393165..3394082 (-) 918 WP_065180520.1 flagellar hook-associated protein FlgL -
  ACE1EH_RS16635 (ACE1EH_16635) flgK 3394094..3395611 (-) 1518 WP_044801917.1 flagellar hook-associated protein FlgK -
  ACE1EH_RS16640 (ACE1EH_16640) - 3395627..3396109 (-) 483 WP_375004589.1 flagellar protein FlgN -
  ACE1EH_RS16645 (ACE1EH_16645) flgM 3396124..3396390 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACE1EH_RS16650 (ACE1EH_16650) - 3396460..3396879 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ACE1EH_RS16655 (ACE1EH_16655) comFC 3396953..3397642 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  ACE1EH_RS16660 (ACE1EH_16660) - 3397648..3397932 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACE1EH_RS16665 (ACE1EH_16665) comFA 3397990..3399375 (-) 1386 WP_375004591.1 DEAD/DEAH box helicase Machinery gene
  ACE1EH_RS16670 (ACE1EH_16670) - 3399484..3400332 (-) 849 WP_082998319.1 DegV family protein -
  ACE1EH_RS16675 (ACE1EH_16675) degU 3400430..3401119 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACE1EH_RS16680 (ACE1EH_16680) degS 3401196..3402359 (-) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator
  ACE1EH_RS16685 (ACE1EH_16685) - 3402582..3403229 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52273.56 Da        Isoelectric Point: 9.9925

>NTDB_id=1051896 ACE1EH_RS16665 WP_375004591.1 3397990..3399375(-) (comFA) [Bacillus velezensis strain HJ-16]
MSGGASEFSEVRDFFYGRHLLRSEIPFSDQRINGFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEV
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSELPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=1051896 ACE1EH_RS16665 WP_375004591.1 3397990..3399375(-) (comFA) [Bacillus velezensis strain HJ-16]
ATGTCCGGAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACGGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGGTCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGGTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTATCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCAGAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATTGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(329-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.457

99.132

0.629
  comFA Latilactobacillus sakei subsp. sakei 23K

38.182

95.445

0.364

Multiple sequence alignment