Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACE1EH_RS16655 Genome accession   NZ_CP169535
Coordinates   3396953..3397642 (-) Length   229 a.a.
NCBI ID   WP_198161198.1    Uniprot ID   -
Organism   Bacillus velezensis strain HJ-16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3391953..3402642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE1EH_RS16620 (ACE1EH_16620) fliW 3392044..3392475 (-) 432 WP_375004588.1 flagellar assembly protein FliW -
  ACE1EH_RS16625 (ACE1EH_16625) - 3392505..3393074 (-) 570 WP_007407476.1 DUF6470 family protein -
  ACE1EH_RS16630 (ACE1EH_16630) flgL 3393165..3394082 (-) 918 WP_065180520.1 flagellar hook-associated protein FlgL -
  ACE1EH_RS16635 (ACE1EH_16635) flgK 3394094..3395611 (-) 1518 WP_044801917.1 flagellar hook-associated protein FlgK -
  ACE1EH_RS16640 (ACE1EH_16640) - 3395627..3396109 (-) 483 WP_375004589.1 flagellar protein FlgN -
  ACE1EH_RS16645 (ACE1EH_16645) flgM 3396124..3396390 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACE1EH_RS16650 (ACE1EH_16650) - 3396460..3396879 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  ACE1EH_RS16655 (ACE1EH_16655) comFC 3396953..3397642 (-) 690 WP_198161198.1 phosphoribosyltransferase family protein Machinery gene
  ACE1EH_RS16660 (ACE1EH_16660) - 3397648..3397932 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  ACE1EH_RS16665 (ACE1EH_16665) comFA 3397990..3399375 (-) 1386 WP_375004591.1 DEAD/DEAH box helicase Machinery gene
  ACE1EH_RS16670 (ACE1EH_16670) - 3399484..3400332 (-) 849 WP_082998319.1 DegV family protein -
  ACE1EH_RS16675 (ACE1EH_16675) degU 3400430..3401119 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACE1EH_RS16680 (ACE1EH_16680) degS 3401196..3402359 (-) 1164 WP_007614106.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25215.80 Da        Isoelectric Point: 8.0779

>NTDB_id=1051895 ACE1EH_RS16655 WP_198161198.1 3396953..3397642(-) (comFC) [Bacillus velezensis strain HJ-16]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1051895 ACE1EH_RS16655 WP_198161198.1 3396953..3397642(-) (comFC) [Bacillus velezensis strain HJ-16]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGTAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
TGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment