Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ACEX67_RS11745 Genome accession   NZ_CP169520
Coordinates   2460722..2461057 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain CX-H3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2455722..2466057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEX67_RS11725 (ACEX67_11725) gcvT 2456333..2457433 (-) 1101 WP_014305405.1 glycine cleavage system aminomethyltransferase GcvT -
  ACEX67_RS11730 (ACEX67_11730) - 2457856..2459526 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  ACEX67_RS11735 (ACEX67_11735) - 2459544..2460338 (+) 795 WP_240679748.1 YqhG family protein -
  ACEX67_RS11740 (ACEX67_11740) sinI 2460515..2460688 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  ACEX67_RS11745 (ACEX67_11745) sinR 2460722..2461057 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  ACEX67_RS11750 (ACEX67_11750) tasA 2461105..2461890 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  ACEX67_RS11755 (ACEX67_11755) sipW 2461954..2462538 (-) 585 WP_240679749.1 signal peptidase I SipW -
  ACEX67_RS11760 (ACEX67_11760) tapA 2462510..2463181 (-) 672 WP_003153099.1 amyloid fiber anchoring/assembly protein TapA -
  ACEX67_RS11765 (ACEX67_11765) - 2463440..2463769 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  ACEX67_RS11770 (ACEX67_11770) - 2463809..2463988 (-) 180 WP_003153093.1 YqzE family protein -
  ACEX67_RS11775 (ACEX67_11775) comGG 2464045..2464422 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACEX67_RS11780 (ACEX67_11780) comGF 2464423..2464923 (-) 501 WP_235570156.1 competence type IV pilus minor pilin ComGF -
  ACEX67_RS11785 (ACEX67_11785) comGE 2464832..2465146 (-) 315 WP_057080485.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACEX67_RS11790 (ACEX67_11790) comGD 2465130..2465567 (-) 438 WP_015388002.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACEX67_RS11795 (ACEX67_11795) comGC 2465557..2465865 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=1051655 ACEX67_RS11745 WP_003153104.1 2460722..2461057(+) (sinR) [Bacillus velezensis strain CX-H3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=1051655 ACEX67_RS11745 WP_003153104.1 2460722..2461057(+) (sinR) [Bacillus velezensis strain CX-H3]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment