Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   R8616_RS01565 Genome accession   NZ_AP028382
Coordinates   310798..312360 (+) Length   520 a.a.
NCBI ID   WP_052782729.1    Uniprot ID   A0A5T1YPN4
Organism   Campylobacter coli strain BCH-11051     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305798..317360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8616_RS01545 (B11051_03010) ctsR 307916..308227 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8616_RS01550 (B11051_03020) ctsD 308205..309623 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8616_RS01555 (B11051_03030) ctsP 309616..310212 (+) 597 WP_052780105.1 ATP-binding protein Machinery gene
  R8616_RS01560 (B11051_03040) - 310209..310805 (+) 597 WP_002779313.1 CDC27 family protein -
  R8616_RS01565 (B11051_03050) ctsE 310798..312360 (+) 1563 WP_052782729.1 GspE/PulE family protein Machinery gene
  R8616_RS01570 (B11051_03060) ctsF 312347..313522 (+) 1176 WP_025399236.1 type II secretion system F family protein Machinery gene
  R8616_RS01575 (B11051_03070) - 313519..314283 (-) 765 WP_002781157.1 TSUP family transporter -
  R8616_RS01580 (B11051_03080) - 314286..315050 (-) 765 WP_002781156.1 TIGR02757 family protein -
  R8616_RS01585 (B11051_03090) flgK 315067..316893 (-) 1827 WP_002784059.1 flagellar hook-associated protein FlgK -
  R8616_RS01590 (B11051_03100) - 316903..317337 (-) 435 WP_002779263.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59918.56 Da        Isoelectric Point: 5.4959

>NTDB_id=105138 R8616_RS01565 WP_052782729.1 310798..312360(+) (ctsE) [Campylobacter coli strain BCH-11051]
MIERFLFEDYINGKITLEQIDREYKIDSEIFLKALASDKNISYFTLEELDFSLGEKFPCSFLFKFKILPILSKENTLHIA
SSKPCSLELLDEIRIFYEVKNIEVLIASEFKIMKFLYKLQVREKLKNLSTNLRLEWKENRSQDEQSCISQIFDFILDEIL
EFNPSDIHIEARENDALIRFRVDGILREFACLEKDIYEALVFHIKFLSQLNVAESRKAQDGNFELKIKENRYDFRISSLP
LQNGESIVIRILKHNEEILDLENLNLGEKNLTILKKALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPI
EYKMPLIQQILLNPKAGLEFNNALRAILRQDPDIIMIGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTIDRLIDMSA
KPYLIASALRLIIAQRLVRKLCPKCKQKSTKVYEIKGDFFEAKGCEYCHHSGYQGRELISECLYIDEEIAQVIREGGYKN
KILELAKAKGFQSMFEQGLQKAKEGITSIDELLRVLNEAL

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=105138 R8616_RS01565 WP_052782729.1 310798..312360(+) (ctsE) [Campylobacter coli strain BCH-11051]
ATGATTGAGCGATTTTTATTTGAAGATTATATTAATGGTAAAATCACCCTTGAGCAAATTGATCGTGAGTATAAAATCGA
TAGTGAAATTTTTCTAAAAGCTTTGGCTAGTGATAAAAATATTTCTTATTTTACTTTAGAGGAACTTGATTTTAGTTTGG
GTGAAAAATTTCCATGTAGTTTTCTTTTTAAATTTAAAATCTTGCCCATTTTAAGTAAAGAAAATACACTTCATATAGCA
AGCTCCAAACCTTGTTCTTTAGAGCTTTTAGATGAGATTAGAATTTTTTATGAAGTTAAGAATATAGAAGTTTTGATCGC
AAGTGAATTTAAGATTATGAAATTTTTATATAAACTTCAAGTTAGAGAAAAACTTAAAAATTTAAGCACAAATCTTAGAT
TAGAATGGAAAGAAAATAGAAGTCAAGATGAGCAAAGTTGCATCAGTCAAATTTTTGATTTTATACTCGATGAAATTCTT
GAATTTAATCCTAGTGATATACATATAGAAGCAAGAGAAAATGATGCTTTGATAAGATTTAGGGTAGATGGAATTTTACG
CGAATTTGCTTGTCTTGAAAAAGATATTTATGAGGCTTTGGTTTTTCATATTAAATTTTTATCGCAGCTTAATGTTGCAG
AATCAAGAAAGGCACAAGATGGAAATTTTGAGCTTAAAATCAAAGAAAATAGATATGATTTTAGGATTTCATCTTTGCCT
TTGCAAAATGGCGAAAGCATTGTGATAAGAATTTTAAAACACAACGAAGAAATTTTGGATTTAGAAAATTTAAATTTGGG
CGAAAAAAATCTTACAATTCTAAAAAAAGCCCTATACAACCCTTATGGAATGATTTTACTAACAGGTCCTACAGGAAGTG
GAAAAAGTACAAGTTTATATGCTTGTTTAAATGAGCTAAAAAGCATAGAAAAGAAAATAATTTCTGTGGAAGATCCTATA
GAATATAAAATGCCTTTAATTCAGCAAATTTTGCTAAATCCAAAAGCAGGGCTTGAATTTAATAATGCCCTAAGAGCTAT
TTTAAGACAAGATCCTGATATTATCATGATAGGAGAAATCAGAGATGAGGAGAGTCTTGATATAGCGATTAAGGCTTCTT
TAACAGGACACTTGCTTTTAAGTACCTTGCATACAAATAATGCCATTTCTACCATAGATAGATTAATTGACATGAGTGCA
AAGCCTTATTTGATCGCTTCTGCTTTAAGGCTTATCATTGCCCAGCGTTTAGTGCGCAAGCTTTGTCCTAAATGCAAGCA
AAAAAGCACTAAGGTTTATGAAATAAAAGGTGATTTTTTTGAAGCTAAAGGCTGCGAGTATTGTCATCATAGTGGATATC
AAGGTAGAGAACTCATCAGTGAGTGTTTATATATCGATGAGGAAATAGCTCAAGTTATTAGAGAGGGTGGTTATAAAAAT
AAAATTCTAGAGCTTGCTAAAGCAAAGGGTTTTCAAAGTATGTTTGAGCAAGGTTTGCAAAAAGCAAAAGAGGGTATAAC
TAGCATAGATGAGCTTTTAAGGGTACTTAATGAAGCTTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(32-123)

Type II/IV secretion system protein (T2SSE)

(155-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1YPN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

67.383

98.462

0.663
  pilB Acinetobacter baylyi ADP1

35.357

100

0.381
  pilB Legionella pneumophila strain ERS1305867

40.412

93.269

0.377

Multiple sequence alignment