Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8634_RS07915 Genome accession   NZ_AP028381
Coordinates   1519328..1520509 (-) Length   393 a.a.
NCBI ID   WP_317656134.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11000     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1514328..1525509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8634_RS07885 (B11000_15680) - 1514872..1515213 (+) 342 WP_002784057.1 hypothetical protein -
  R8634_RS07890 (B11000_15690) flgM 1515276..1515473 (+) 198 WP_002872343.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8634_RS07895 (B11000_15700) - 1515516..1515950 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8634_RS07900 (B11000_15710) flgK 1515960..1517786 (+) 1827 WP_002867248.1 flagellar hook-associated protein FlgK -
  R8634_RS07905 (B11000_15720) - 1517803..1518567 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8634_RS07910 (B11000_15730) - 1518571..1519335 (+) 765 WP_002855821.1 TSUP family transporter -
  R8634_RS07915 (B11000_15740) ctsF 1519328..1520509 (-) 1182 WP_317656134.1 type II secretion system F family protein Machinery gene
  R8634_RS07920 (B11000_15750) ctsE 1520506..1522065 (-) 1560 WP_052778626.1 GspE/PulE family protein Machinery gene
  R8634_RS07925 (B11000_15760) ctsX 1522055..1522642 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8634_RS07930 (B11000_15770) ctsP 1522646..1523254 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8634_RS07935 (B11000_15780) ctsD 1523247..1524659 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8634_RS07940 (B11000_15790) ctsR 1524637..1524948 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45714.34 Da        Isoelectric Point: 9.0938

>NTDB_id=105128 R8634_RS07915 WP_317656134.1 1519328..1520509(-) (ctsF) [Campylobacter jejuni strain BCH-11000]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLIARLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=105128 R8634_RS07915 WP_317656134.1 1519328..1520509(-) (ctsF) [Campylobacter jejuni strain BCH-11000]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTGCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985

Multiple sequence alignment