Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   R8634_RS07920 Genome accession   NZ_AP028381
Coordinates   1520506..1522065 (-) Length   519 a.a.
NCBI ID   WP_052778626.1    Uniprot ID   A0A5Y9I272
Organism   Campylobacter jejuni strain BCH-11000     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1515506..1527065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8634_RS07895 (B11000_15700) - 1515516..1515950 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8634_RS07900 (B11000_15710) flgK 1515960..1517786 (+) 1827 WP_002867248.1 flagellar hook-associated protein FlgK -
  R8634_RS07905 (B11000_15720) - 1517803..1518567 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8634_RS07910 (B11000_15730) - 1518571..1519335 (+) 765 WP_002855821.1 TSUP family transporter -
  R8634_RS07915 (B11000_15740) ctsF 1519328..1520509 (-) 1182 WP_317656134.1 type II secretion system F family protein Machinery gene
  R8634_RS07920 (B11000_15750) ctsE 1520506..1522065 (-) 1560 WP_052778626.1 GspE/PulE family protein Machinery gene
  R8634_RS07925 (B11000_15760) ctsX 1522055..1522642 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8634_RS07930 (B11000_15770) ctsP 1522646..1523254 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8634_RS07935 (B11000_15780) ctsD 1523247..1524659 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8634_RS07940 (B11000_15790) ctsR 1524637..1524948 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60134.88 Da        Isoelectric Point: 5.6851

>NTDB_id=105129 R8634_RS07920 WP_052778626.1 1520506..1522065(-) (ctsE) [Campylobacter jejuni strain BCH-11000]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLSCAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=105129 R8634_RS07920 WP_052778626.1 1520506..1522065(-) (ctsE) [Campylobacter jejuni strain BCH-11000]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAACAAATTAGCAAATTTTTGTAATTTACATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATCACAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGAAATGATGATGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACACAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAAATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGTCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATTTCCGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTCAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGTAA
GCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAGTGCTTAGAGATCAATGAAGATTTATCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y9I272

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

99.615

100

0.996

Multiple sequence alignment