Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8634_RS07940 Genome accession   NZ_AP028381
Coordinates   1524637..1524948 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain BCH-11000     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1519637..1529948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8634_RS07920 (B11000_15750) ctsE 1520506..1522065 (-) 1560 WP_052778626.1 GspE/PulE family protein Machinery gene
  R8634_RS07925 (B11000_15760) ctsX 1522055..1522642 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8634_RS07930 (B11000_15770) ctsP 1522646..1523254 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8634_RS07935 (B11000_15780) ctsD 1523247..1524659 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8634_RS07940 (B11000_15790) ctsR 1524637..1524948 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8634_RS07945 (B11000_15800) nifJ 1524972..1528532 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8634_RS07950 (B11000_15810) - 1528626..1529267 (-) 642 WP_002855494.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=105133 R8634_RS07940 WP_002855438.1 1524637..1524948(-) (ctsR) [Campylobacter jejuni strain BCH-11000]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=105133 R8634_RS07940 WP_002855438.1 1524637..1524948(-) (ctsR) [Campylobacter jejuni strain BCH-11000]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment