Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACEYZN_RS14875 Genome accession   NZ_CP169375
Coordinates   3161076..3161486 (-) Length   136 a.a.
NCBI ID   WP_057092817.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain H3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3156076..3166486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEYZN_RS14845 (ACEYZN_14845) - 3156162..3156431 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ACEYZN_RS14850 (ACEYZN_14850) rapZ 3156428..3157279 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ACEYZN_RS14855 (ACEYZN_14855) panC 3157302..3158150 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ACEYZN_RS14860 (ACEYZN_14860) panB 3158154..3158963 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACEYZN_RS14865 (ACEYZN_14865) folK 3159009..3159491 (-) 483 WP_000219222.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACEYZN_RS14870 (ACEYZN_14870) pcnB 3159488..3160951 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  ACEYZN_RS14875 (ACEYZN_14875) comEA 3161076..3161486 (-) 411 WP_057092817.1 ComEA family DNA-binding protein Machinery gene
  ACEYZN_RS14880 (ACEYZN_14880) mazG 3161455..3162261 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  ACEYZN_RS14885 (ACEYZN_14885) - 3162373..3163146 (+) 774 WP_057092818.1 SDR family oxidoreductase -
  ACEYZN_RS14890 (ACEYZN_14890) - 3163191..3165497 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15656.94 Da        Isoelectric Point: 10.3495

>NTDB_id=1051111 ACEYZN_RS14875 WP_057092817.1 3161076..3161486(-) (comEA) [Acinetobacter baumannii strain H3]
MQYSMRFWKNKYFLLIMLCLGVISPSVCAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNSSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1051111 ACEYZN_RS14875 WP_057092817.1 3161076..3161486(-) (comEA) [Acinetobacter baumannii strain H3]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTGCGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATAGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

99.265

100

0.993
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baylyi ADP1

44.275

96.324

0.426

Multiple sequence alignment